INTEGRATE |
C++ |
https://sourceforge.net/projects/integrate-fusion/ |
[64] |
FusionMatcher |
Python script |
https://github.com/ErasmusMC-Bioinformatics/fuma |
[65] |
IDP-fusion |
Python script |
http://www.healthcare.uiowa.edu/labs/au/IDP-fusion/ |
[40] |
JAFFA |
Java script |
https://github.com/Oshlack/JAFFA/wiki |
[42] |
NCLscan |
Python script |
https://github.com/TreesLab/NCLscan |
[66] |
TRUP |
Perl script |
https://github.com/ruping/TRUP |
[46] |
ChildDecode |
- |
http://www.fusiongenomics.com/onetestproducts/ |
[67] |
FusionCatcher |
Python script |
http://code.google.com/p/fusioncatcher/ |
[68] |
Pegasus |
Java, Perl and Python |
http://sourceforge.net/projects/pegasus-fus/ |
[69] |
PRADA |
Python script |
http://bioinformatics.mdanderson.org/main/PRADA:Overview |
[70] |
CRAC |
C++ script |
http://crac.gforge.inria.fr |
[38] |
FusionQ |
Perl script |
https://sites.google.com/site/fusionq1/home/ |
[47] |
SOAPFuse |
Perl script |
http://soap.genomics.org.cn/soapfuse.html |
[71] |
SOAPfusion |
|
http://soap.genomics.org.cn/SOAPfusion.html |
|
Bellerophontes |
Java script |
http://eda.polito.it/bellerophontes/ |
[43] |
BreakFusion |
Several tools |
http://bioinformatics.mdanderson.org/main/BreakFusion |
[54] |
elDorado |
- |
https://www.genomatix.de/index.html |
[72] |
Dissect |
C++ script |
http://dissect-trans.sourceforge.net/Home |
[44] |
EricScript |
Perl and R |
http://sourceforge.net/projects/ericscript/ |
[73] |
FusionAnalyser |
C#,Window/Linux based |
http://www.ngsbicocca.org/html/fusion_analyser.html |
[61] |
FusionFinder |
Perl script |
http://bioinformatics.childhealthresearch.org.au/software/fusionfinder/ |
[74] |
LifeScope |
|
https://www.thermofisher.com/uk/en/home/technical-resources/software-downloads/lifescope-genomic-analysis-software.html |
|
nFuse |
Perl script |
https://code.google.com/p/nfuse/ |
[41] |
ChimeraScan |
C++ script |
http://code.google.com/p/chimerascan/ |
[57] |
Comrad |
C++ and Perl |
https://code.google.com/p/comrad/ |
[37] |
deFuse |
C++ script |
http://sourceforge.net/projects/defuse/ |
[11] |
FusionHunter |
Perl script |
http://bioen-compbio.bioen.illinois.edu/FusionHunter/ |
[60] |
FusionMap |
Executable file |
http://www.arrayserver.com/wiki/index.php?title=FusionMap |
[39] |
ShortFuse |
C++ script |
https://bitbucket.org/mckinsel/shortfuse |
[59] |
SnowShoes-FTD |
Perl Script |
http://bioinformaticstools.mayo.edu/research/snowshoes-ftd/ |
[58] |
TopHat-Fusion |
Python script |
http://tophat.cbcb.umd.edu/fusion_index.html |
[35] |
FusionSeq |
C script |
http://archive.gersteinlab.org/proj/rnaseq/fusionseq/ |
[29] |
MapSplice |
Python script |
http://www.netlab.uky.edu/p/bioinfo/MapSplice |
[45] |