Table 1.
IA | 1-1 | 1-2 | 1-3 | 1-4 | 1-5 | 1-6 | |
---|---|---|---|---|---|---|---|
Clean data | 11,141,234 | 11,888,887 | 11,146,287 | 11,196,662 | 10,174,721 | 10,566,997 | 10,914,242 |
Unique reads | 2,273,938 | 2,020,357 | 1,852,268 | 1,825,295 | 1,083,067 | 1,768,179 | 2,229,097 |
Singletons | 1,540,073 | 1,478,502 | 1,333,911 | 1,307,798 | 796,228 | 1,240,766 | 1,606,571 |
Reads length (nt) | 18∼30 | 18∼30 | 18∼30 | 18∼30 | 18∼30 | 18∼30 | 18∼30 |
Mapped reads | 1,715,684 | 1,542,499 | 1,413,949 | 1,383,724 | 651,796 | 1,057,442 | 1,303,246 |
Mapped per (%) | 75.45 | 76.35 | 76.34 | 75.81 | 60.18 | 59.80 | 58.47 |
Mapped reads: a count of the unique reads that matched to R. solani AG1 IA genome sequence. IA: library without plant infection; 1-1, 1-2, 1-3, 1-4, 1-5, and 1-6: libraries after infection at 10-h, 18-h, 24-h, 32-h, 48-h, and 72-h, respectively.