Table 1. Output statistics and annotation information of sequencing reads.

Samples	Bf28	Sol28	Bf35	Sol35	Bf36	Sol36
Total Raw Reads	49555138	58692584	61287470	45746116	52937176	45598708
Total Raw Bases	7433234451	8803827601	9193073579	6861868795	7940534454	6839770097
Total Clean Reads	49352408	58461242	61075694	45576854	52746750	45420670
Total Clean Reads Ratio (%)	99.59	99.61	99.65	99.63	99.64	99.61
Total Clean Bases	7402826198	8769127311	9161309457	6836480369	7911972812	6813066445
Total Clean Bases Ratio (%)	99.59	99.61	99.65	99.63	99.64	99.61
Total Adatper Reads	200014	228096	208330	166640	187446	175274
Total Adatper Reads Ratio (%)	0.4	0.39	0.34	0.36	0.35	0.38
Total Low Quality Reads	2716	3246	3446	2622	2980	2764
Total Low Quality Reads Ratio (%)	0.01	0.01	0.01	0.01	0.01	0.01
Total mapped reads	35658792	43186685	44312452	33351173	38652816	33154664
Total_mapped_reads ratio (%)	72.25	73.87	72.55	73.18	73.28	72.99
Unique_mapped_reads	32771959	39616300	40857286	30702573	35553024	30481376
Unique_mapped_reads ratio (%)	66.40	67.77	66.90	67.36	67.40	67.11
Multiple mapped reads	2886833	3570385	3455166	2648600	3099792	2673288
Multiple mapped reads ratio (%)	5.85	6.11	5.66	5.81	5.88	5.89
Splice mapped reads	18590717	21283468	22403682	16390281	19845875	16751780
Splice mapped reads ratio (%)	37.67	36.41	36.68	35.96	37.62	36.88
Reads mapped in paired	31103596	37330898	37871612	28756792	33425164	28855248
Reads_mapped_in_paired ratio (%)	63.02	63.86	62.01	63.10	63.37	63.53
Read_mapped_Gene (%)	49.58	48.71	48.03	48.95	48.98	48.95
Detected_Gene_Number	16251	16785	16841	16241	16784	16402
Q20 (%)	95.78	95.38	95.16	95.14	95.30	95.70
GC content (%)	54	53.58	54.08	53.80	54.22	54.59