Table 1.
Use | Target | Kit name | Abbreviation | Company |
---|---|---|---|---|
Extraction | DNA | PowerLyzer PowerSoil DNA Isolation Kit | PL | MO BIO Laboratories |
Extraction | DNA | FastDNA SPIN Kit for Soil | FDS | MP Biomedicals |
Extraction | DNA | ZR Soil Microbe DNA MiniPrep | SM | Zymo Research |
Extraction | DNA/RNA | MasterPure RNA Purification Kitb | MP | Epicentre Biotechnologies |
Extraction | DNA/RNA | PowerMicrobiome RNA Isolation Kit | PM | MO BIO Laboratories |
Extraction | RNA | RNA PowerSoil Total RNA Isolation Kit | PS | MO BIO Laboratories |
Extraction | DNA | RNA PowerSoil DNA Elution Accessory Kit (used in conjunction with the above RNA kit) | AK | MO BIO Laboratories |
Purification | DNA | E.Z.N.A. Cycle Pure Kit | CP | Omega Bio-Tek |
Purification | DNA | MinElute Reaction Cleanup Kit | MRC | QIAGEN |
Purification | DNA | Genomic DNA Clean & Concentrator | gDCC | Zymo Research |
Purification | RNA | RNeasy Mini Kit | RM | QIAGEN |
Purification | RNA | RNA Clean & Concentrator – 5 | RCC | Zymo Research |
Purification | DNA/RNA | OneStep PCR Inhibitor Removal Kit | OPIR | Zymo Research |
aThe purification kits were tested in combination with the modified method described in this paper.
bThe lysate was obtained using the phenol-chloroform extraction as detailed previously (Nicolaisen et al., 2008).