Table 1.
Bacterial genomes used in comparative genomic analyses.
| Strain | Phenotype | Isolation source | GenBank species assignation | Species based on phylogeny and ANI | Accession | Reference |
|---|---|---|---|---|---|---|
| Ae398 | Non-vAh | Human | A. caviae | A. caviae | SAMEA2272404 | Beatson et al., 2011 |
| YL12 | Non-vAh | Compost | A. caviae | A. caviae | SAMN02870964 | Lim et al., 2014 |
| AAK1 | Non-vAh | Clinical | A. dhakensis | A. dhakensis | SAMD00036618 | Martínez-Murcía et al., 2008 |
| 1999lcr | Non-vAh | Clinical | A. trota | A. molluscorum | SAMN02732394 | Dallagassa et al., Unpublished |
| 116 | Non-vAh | Clinical | A. hydrophila | A. dhakensis | NZ_ANPN00000000.1 | Chan et al., 2011 |
| 14 | Non-vAh | Clinical | A. hydrophila | A. dhakensis | NZ_AOBM00000000.1 | Chan et al., 2011 |
| 173 | Non-vAh | Clinical | A. hydrophila | A. dhakensis | NZ_AOBN00000000.1 | Chan et al., 2011 |
| 187 | Non-vAh | Clinical | A. hydrophila | A. dhakensis | NZ_AOBO00000000.1 | Chan et al., 2011 |
| 226 | Non-vAh | Clinical | A. hydrophila | A. hydrophila | NZ_JEML00000000.1 | Chan et al., 2011 |
| 259 | Non-vAh | Clinical | A. hydrophila | A. dhakensis | NZ_AOBP00000000.1 | Chan et al., 2011 |
| 277 | Non-vAh | Clinical | A. hydrophila | A. dhakensis | NZ_AOBQ00000000.1 | Chan et al., 2011 |
| 4AK4 | Non-vAh | Industrial | A. hydrophila | A. sp. nov. | NZ_CP006579.1 | Gao et al., 2013 |
| AD9 | Non-vAh | Soil | A. hydrophila | A. hydrophila | NZ_JFJO00000000.1 | Lenneman and Barney, 2014 |
| Ae34 | Non-vAh | Koi carp | A. hydrophila | A. hydrophila | NZ_BAXY00000000.1 | Jagoda et al., 2014 |
| AH10 | Non-vAh | Grass carp | A. hydrophila | A. hydrophila | NZ_CP011100.1 | Xu et al., 2013 |
| AL06-01 | Non-vAh | Bluegill | A. hydrophila | A. hydrophila | SAMN01085623 | Hossain et al., 2013 |
| AL06-06 | Non-vAh | Goldfish | A. hydrophila | A. hydrophila | NZ_CP010947.1 | Tekedar et al., 2015 |
| AL10-121 | Non-vAh | Channel catfish | A. hydrophila | A. hydrophila | NZ_LRRW00000000.1 | Hossain, 2012 |
| AL97-91 | Non-vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN04967787 | Hossain, 2012 |
| ATCC7966T | Non-vAh | Milk tin | A. hydrophila | A. hydrophila | NC_008570.1 | Seshadri et al., 2006 |
| BWH65 | Non-vAh | Clinical | A. hydrophila | A. caviae | NZ_LESK00000000.1 | Earl et al., 2015 |
| E1 | Non-vAh | Clinical | A. hydrophila | A. hydrophila | SAMN01886638 | Grim et al., 2013 |
| E2 | Non-vAh | Clinical | A. hydrophila | A. hydrophila | SAMN01886639 | Grim et al., 2013 |
| GA97-22 | Non-vAh | Rainbow trout | A. hydrophila | Aeromonas spp. | SAMN01085627 | Hossain, 2012 |
| HZM | Non-vAh | Soil | A. hydrophila | A. caviae | SAMN02596469 | Chua et al., 2015 |
| KOR1 | Non-vAh | Mangrove | A. hydrophila | A. dhakensis | NZ_LJOE00000000.1 | Yin et al., 2015 |
| MN98-04 | Non-vAh | Tilapia | A. hydrophila | A. hydrophila | SAMN04967900 | Hossain, 2012 |
| RB-AH | Non-vAh | Soil | A. hydrophila | A. hydrophila | NZ_JPEH00000000.1 | Rheault et al., 2015 |
| S14-230 | Non-vAh | Tilapia | A. hydrophila | A. hydrophila | SAMN05292364 | This study |
| SSU | Non-vAh | Clinical | A. hydrophila | A. dhakensis | NZ_AGWR00000000.1 | Ribeiro et al., 2012 |
| TN97-08 | Non-vAh | Bluegill | A. hydrophila | A. hydrophila | NZ_LNUR00000000.1 | Hossain, 2012 |
| YL17 | Non-vAh | Compost | A. hydrophila | A. dhakensis | NZ_CP007518.2 | Lim et al., 2016 |
| WS | Non-vAh | Water sample | A. media | A. media | SAMN02472129 | Chai et al., 2012 |
| 848T | Non-vAh | Wedge-shells | A. molluscorum | A. molluscorum | SAMN02471397 | Spataro et al., 2013 |
| LMG24683T | Non-vAh | Unknown | A. taiwanensis | A. taiwanensis | SAMEA2752407 | Colston et al., 2014 |
| MDS8 | Non-vAh | Dairy sludge | Aeromonas sp. | A. dhakensis | SAMN02472124 | Raychaudhuri et al., 2013 |
| Ahy_Idx71 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05292361 | This study |
| AL09-71 | vAh | Channel catfish | A. hydrophila | A. hydrophila | NZ_CP007566.1 | Pridgeon et al., 2014 |
| AL09-79 | vAh | Channel catfish | A. hydrophila | A. hydrophila | NZ_LRRV00000000.1 | Hossain, 2012 |
| ALG15-098 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05223361 | This study |
| IPRS15-28 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05223362 | This study |
| J-1 | vAh | Crucian carp | A. hydrophila | A. hydrophila | NZ_CP006883.1 | Pang et al., 2015 |
| JBN2301 | vAh | Crucian carp | A. hydrophila | A. hydrophila | NZ_CP013178.1 | Yang et al., 2016 |
| ML09-119 | vAh | Channel catfish | A. hydrophila | A. hydrophila | NC_021290.1 | Liles et al., 2011 |
| ML09-121 | vAh | Channel catfish | A. hydrophila | A. hydrophila | NZ_LRRX00000000.1 | Hossain, 2012 |
| ML09-122 | vAh | Channel catfish | A. hydrophila | A. hydrophila | NZ_LRRY00000000. | Hossain, 2012 |
| ML10-51K | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05223363 | This study |
| NJ-35 | vAh | Crucian carp | A. hydrophila | A. hydrophila | NZ_CP006870.1 | Pang et al., 2015 |
| PB10-118 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN01085622 | Hossain, 2012 |
| pc104A | vAh | Soil | A. hydrophila | A. hydrophila | NZ_CP007576.1 | Pridgeon et al., 2014 |
| S04-690 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN02404466 | Hossain et al., 2014 |
| S13-612 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05292362 | This study |
| S13-700 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05292363 | This study |
| S14-296 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05292365 | This study |
| S14-452 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05256776 | This study |
| S14-458 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05223364 | This study |
| S14-606 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05292366 | This study |
| S15-130 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05223365 | This study |
| S15-242 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05223366 | This study |
| S15-400 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05223367 | This study |
| S15-591 | vAh | Channel catfish | A. hydrophila | A. hydrophila | SAMN05223368 | This study |
| ZC1 | vAh | Grass carp | A. hydrophila | A. hydrophila | SAMN02404465 | Hossain et al., 2014 |
Strains are indicated as virulent A. hydrophila (vAh) or other Aeromonas spp. based on their phylogenetic affiliation (Figure 1).