Table S3.

Human nuclear reads

Sample	Total reads	Mapped reads	Unique reads	Nuclear coverage
CA depletion	41,669,177	12,667,791	12,033,290	0.2116
CM depletion	36,781,114	6,221,402	5,841,497	0.1937
POS depletion	47,712,546	4,309,690	4,111,376	0.2290
CA capture	52,310,688	2,468,011	2,321,087	0.2073
CM capture	32,441,831	1,734,974	1,611,254	0.1881
POS capture	32,323,796	219,493	203,647	0.0451