Table 1. Overview of the transcriptome.
Info | All transcript contigs (only longest isoform per ‘GENE’) |
---|---|
Total raw reads | 63,533,268 |
Total raw nucleotide | 6,416,860,068 |
Total clean reads | 62,481,222 |
Total clean nucleotides | 6,228,699,940 |
Q20 percentage | 99.20% |
GC percentage | 42.03% |
Total trinity ‘genes’ | 39,730 (33,070) |
Total trinity transcripts | 39,730 (33,070) |
Maximum length of contigs | 26,786 (26,786) |
Minimum length of contigs | 201 (201) |
Median length of contigs | 451 (384) |
Mean length of contigs | 978.43 (833.32) |
N50 of unigenes | 1,889 (1,630) |
Total assembled bases | 38,873,002 (27,557,931) |