Table 3. Pycnophyes kielensis genome organization.
Gene | Strain | Position (start-stop) | Length (bp) | Intergenic space (bp) | Start codon | Stop codon |
---|---|---|---|---|---|---|
cox1 | + | 3–1586 | 1584 | 19 | GTG | TAA |
trnL1 | + | 1606–1667 | 62 | 3 | ||
trnA | + | 1671–1732 | 62 | -5 | ||
trnS1 | + | 1728–1789 | 62 | 3 | ||
trnF | + | 1793–1848 | 56 | 1 | ||
trnS2 | + | 1850–1915 | 66 | 3 | ||
trnL2 | + | 1919–1980 | 62 | 6 | ||
trnE | + | 1987–2049 | 63 | 238 | ||
trnV | + | 2288–2350 | 63 | 15 | ||
rrnS | + | 2366–3098 | 733 | 0 | ||
trnG | + | 3099–3160 | 62 | 54 | ||
atp8 | + | 3215–3358 | 144 | 2 | ATG | TAA |
trnK | + | 3361–3421 | 61 | 18 | ||
rrnL | + | 3440–4421 | 982 | 104 | ||
nad3 | + | 4526–4852 | 327 | 4 | ATA | TAA |
cytb | + | 4857–5999 | 1143 | 18 | GTG | TAA |
nad4 | + | 6018–7313 | 1296 | 9 | ATA | TAA |
nad1 | + | 7323–8207 | 885 | 245 | ATT | TAG |
nad2 | + | 8453–9442 | 990 | 22 | ATA | TAA |
trnQ | + | 9465–9529 | 65 | 0 | ||
trnM1 | + | 9530–9592 | 63 | 4 | ||
trnC | + | 9597–9656 | 60 | 0 | ||
trnI | + | 9657–9718 | 62 | 4 | ||
trnP | + | 9723–9784 | 62 | 9 | ||
nad4l | + | 9794–10069 | 276 | -11 | ATA | TAA |
trnD | + | 10059–10120 | 62 | 3 | ||
trnT | + | 10124–10185 | 62 | 14 | ||
cox2 | + | 10200–10889 | 690 | 56 | TTG | TAG |
atp6 | + | 10946–11590 | 645 | 10 | ATG | TAA |
trnN | + | 11601–11663 | 63 | 35 | ||
cox3 | + | 11699–12478 | 780 | 9 | ATA | TAA |
trnM2 | + | 12488–12553 | 66 | 0 | ||
nad6 | + | 12554–13018 | 465 | 4 | ATA | TAA |
trnY | + | 13023–13082 | 60 | 4 | ||
trnR | + | 13087–13149 | 63 | 3 | ||
trnH | + | 13153–13213 | 61 | 11 | ||
trnW | + | 13225–13287 | 63 | 6 | ||
nad5 | + | 13294–14982 | 1689 | 5 | ATA | TAA |