Table 1. Summary of read mapping.

Sample ID	Total Reads	Total Base Pairs	Total Mapped	Perfect Match	<=2 bp Mismatch	Unique Match	Multi-positionMatch	Total UnmappedReads
10DAP-1	20,002,310	980,113,190	11,056,527	7,793,992	3,262,535	10,612,172	444,355	8,945,783
	(100.00%)	(100.00%)	(55.28%)	(38.97%)	(16.31%)	(53.05%)	(2.22%)	(44.72%)
10DAP-2	22,664,771	1,110,573,779	12,614,493	8,454,100	4,160,393	12,085,566	528,927	10,050,278
	(100.00%)	(100.00%)	(55.66%)	(37.30%)	(18.36%)	(53.32%)	(2.33%)	(44.34%)
20DAP-1	20,270,262	993,242,838	10,940,658	7,719,242	3,221,416	10,554,431	386,227	9,329,604
	(100.00%)	(100.00%)	(53.97%)	(38.08%)	(15.89%)	(52.07%)	(1.91%)	(46.03%)
20DAP-2	26,549,007	1,300,901,343	14,776,901	9,918,207	4,858,694	14,212,830	564,071	11,772,106
	(100.00%)	(100.00%)	(55.66%)	(37.36%)	(18.30%)	(53.53%)	(2.1 2%)	(44.34%)
30DAP-1	22,672,894	1,110,971,806	1,805,213	8,326,551	3,478,662	11,367,776	437,437	10,867,681
	(100.00%)	(100.00%)	(52.07%)	(36.72%)	(15.34%)	(50.1 4%)	(1.93%)	(47.93%)
30DAP-2	26,246,243	1,286,065,907	14,341,495	9,566,924	4,774,571	13,774,887	566,608	11,904,748
	(100.00%)	(100.00%)	(54.64%)	(36.45%)	(18.19%)	(52.48%)	(2.16%)	(45.36%)
40DAP-1	19,486,774	954,851,926	10,985,869	7,756,014	3,229,855	10,546,443	439,426	8,500,905
	(100.00%)	(100.00%)	(56.38%)	(39.80%)	(16.57%)	(54.1 2%)	(2.25%)	(43.62%)
40DAP-2	22,990,103	1,126,515,047	12,605,059	8,506,821	4,098,238	12,110,211	494,848	10,385,044
	(100.00%)	(100.00%)	(54.83%)	(37.00%)	(17.83%)	(52.68%)	(2.1 5%)	(45.17%)
50DAP-1	19,169,737	939,317,113	10,307,130	7,254,746	3,052,384	9,976,232	330,898	8,862,607
	(100.00%)	(100.00%)	(53.77%)	(37.84%)	(15.92%)	(52.04%)	(1.73%)	(46.23%)
50DAP-2	25,828,212	1,265,582,388	14,090,274	9,488,068	4,602,206	13,587,872	502,402	11,737,938
	(100.00%)	(100.00%)	(54.55%)	(36.74%)	(17.82%)	(52.61%)	(1.95%)	(45.45%)