TABLE 2 .
SNVs in each virus genome segment that are at least 0.5% of populationa
| Viral genome | Mean coverage | No. of SNVs: |
||||
|---|---|---|---|---|---|---|
| Total | ≥1% | ≥10% | ≥50% | ≥90% | ||
| EBOV | 8,334 | 143 (70) | 49 (19) | 3 (1) | 2 (1) | 1 (1) |
| MV | 1,622 | 122 (80) | 72 (42) | 13 (2) | 11 (1) | 11 (1) |
| HRSV | 5,429 | 115 (71) | 54 (27) | 2 (1) | 2 (1) | 2 (1) |
| LACV L segment | 5,539 | 61 (45) | 27 (18) | 4 (1) | 3 (0) | 2 (0) |
| LACV M segment | 10,077 | 31 (21) | 11 (8) | 6 (4) | 0 (0) | 0 (0) |
| LACV S segment | 14,906 | 6 (4) | 4 (2) | 1 (0) | 1 (0) | 1 (0) |
| CDV | 4,741 | 427 (170) | 297 (91) | 30 (6) | 3 (0) | 1 (0) |
| VSV | 13,401 | 109 (72) | 53 (31) | 24 (10) | 24 (10) | 24 (10) |
a
Mean coverage is the mean number of non-PCR-duplicate reads that mapped to each base of the virus genome segment. Each SNV column is listed as the number of total SNVs, followed by the number of nonsynonymous SNVs in parentheses, which are at least the percentage of the population listed in the header. Abbreviations: EBOV, Ebola virus; MV, measles virus; HRSV, human respiratory syncytial virus; LACV, La Crosse virus; CDV, canine distemper virus; VSV, vesicular stomatitis virus.