Table 3.
Analysis of bacterial RNAs [3]
| MEASURE | GC 5 % | Exact GC | No GC | WT |
|---|---|---|---|---|
| BP DIST TARGET | 0.08 ±0.04 | 0.08 ±0.04 | 0.14 ±0.06 | 0 ±0 |
| ENERGY MFE | –0.44 ±0.1 | –0.44 ±0.1 | –0.63 ±0.14 | –0.29 ±0.1 |
| ENERGY TARGET | –0.39 ±0.12 | –0.39 ±0.12 | –0.54 ±0.16 | –0.29 ±0.1 |
| ENSEMBLE DEFECT | 0.16 ±0.08 | 0.16 ±0.08 | 0.23 ±0.1 | 0.14 ±0.09 |
| EXP BP DIST | 0.09 ±0.04 | 0.09 ±0.04 | 0.15 ±0.06 | 0.09 ±0.06 |
| PROP NAT CONTACT | 0.89 ±0.09 | 0.89 ±0.09 | 0.8 ±0.12 | 0.83 ±0.15 |
| POS ENTROPY | 0.19 ±0.08 | 0.19 ±0.08 | 0.23 ±0.09 | 0.35 ±0.18 |
| GC CONTENT | 48.33 ±7.02 | 48.34 ±7.02 | 74.75 ±5.55 | 48.34 ±7.02 |
| LN DUAL PROB | –94.59 ±27.22 | –94.54 ±27.19 | –66.37 ±16.96 | –117.22 ±33.37 |
| LN PROB | –10.12 ±4.04 | –10.09 ±4.03 | –13.71 ±5.16 | –2.34 ±0.95 |
| MH STR DIV | 0.1 ±0.04 | 0.1 ±0.04 | 0.13 ±0.05 | 0.18 ±0.09 |
| VIENNA STR DIV | 0.06 ±0.03 | 0.06 ±0.03 | 0.09 ±0.03 | 0.11 ±0.06 |
See Table 2 for an explanation of column headers and various measures. Since bacterial noncoding RNA is generally much longer than precursor microRNA, no subsequent filtering step was undertaken to ensure that sample sequence MFE structure is identical to that of wild type pre-miRNA. However an additional column is given for sequences required by RNAdualPF to have GC-content is within 5 % of WT value. (column header GC 5 %)