Table 3.
DEGs related to plant hormone metabolism and signaling pathways and transcription factors (TFs) between CK and LT (CK-VS-LT)
| GeneID | Gene length | log2Ratio(LT/CK) | Up-Down-Regulation(LT/CK) | Probability | Gene annotation |
|---|---|---|---|---|---|
| Unigene14044_All | 256 | −1.843769497 | down | 0.716541745 | abscisic acid 8'-hydroxylase |
| CL580.Contig48_All | 754 | 1.27259979 | up | 0.774663281 | PP2C |
| Unigene9712_All | 720 | −1.700722725 | down | 0.762634179 | brassinosteroid insensitive 1 |
| Unigene4038_All | 663 | −1.15134991 | down | 0.740396494 | brassinosteroid insensitive 1 |
| CL4145.Contig1_All | 436 | −1.824955819 | down | 0.800581069 | BRs 1-associated receptor kinase |
| Unigene4486_All | 236 | −2.751491338 | down | 0.84984985 | Ethylene response sensor 1 |
| Unigene22534_All | 230 | −1.419906337 | down | 0.738457156 | Ethylene response sensor 1 |
| CL2610.Contig1_All | 1080 | −1.518999731 | down | 0.801879115 | EIN3-binding F-box protein |
| Unigene10222_All | 255 | −2.230648476 | down | 0.7352979 | EIN3-binding F-box protein |
| CL2941.Contig1_All | 543 | 1.596587443 | up | 0.813476078 | auxin-repressed protein |
| CL2941.Contig2_All | 1062 | 1.516730948 | up | 0.810269619 | auxin-repressed protein |
| Unigene7793_All | 238 | 1.145845871 | up | 0.773991064 | Auxin response factor |
| Unigene13496_All | 379 | 1.090218234 | up | 0.761820357 | indole-3-acetic acid-amido synthetase |
| Unigene21651_All | 201 | −1.631827096 | down | 0.734695671 | indole-3-acetic acid-induced protein |
| Unigene15959_All | 391 | −1.60647149 | down | 0.739220521 | DELLA protein |
| Unigene10398_All | 456 | 1.173251983 | up | 0.732937816 | DELLA protein |
| Unigene11055_All | 1276 | −1.283576382 | down | 0.760756692 | Gibberellin 2 oxidase |
| Unigene1092_All | 683 | −1.991364704 | down | 0.737188408 | Gibberellin 20 oxidase |
| Unigene9129_All | 989 | 1.748223423 | up | 0.822590884 | Gibberellin receptor GID1 |
| Unigene21715_All | 207 | −5.94952025 | down | 0.749639884 | MYB transcription factor |
| Unigene17702_All | 299 | −1.640960381 | down | 0.738882785 | MYB transcription factor |
| Unigene5788_All | 609 | −2.816635393 | down | 0.906141914 | Zinc finger protein |
| Unigene21920_All | 236 | −2.145887308 | down | 0.748960342 | Zinc finger protein |
| Unigene9475_All | 382 | 1.147076601 | up | 0.709884681 | Zinc finger protein |
| CL1123.Contig1_All | 1049 | −1.09309355 | 0.716326082 | down | MADS-box transcription factor |
| Unigene19750_All | 364 | 1.683447547 | 0.796843185 | up | MADS-box transcription factor |
| Unigene721_All | 691 | −1.099964625 | 0.762959708 | down | MADS-box transcription factor |
| Unigene7926_All | 400 | 1.064932847 | 0.711558713 | up | MADS-box transcription factor |
| CL1553.Contig1_All | 531 | −1.026923868 | 0.758009229 | down | MADS-box transcription factor |
| Unigene2215_All | 492 | −1.992582568 | down | 0.704653434 | CAMTA |
| Unigene1182_All | 690 | −4.091560517 | down | 0.945819804 | ERF transcription factor |
| Unigene8478_All | 257 | 1.323055163 | up | 0.787730006 | ERF transcription factor |
| Unigene7269_All | 1007 | −1.603627707 | down | 0.77292333 | WRKY transcription factor |
| Unigene22002_All | 292 | −2.613167976 | 0.704958617 | down | bHLH transcription factor |
| Unigene1490_All | 285 | −1.774205267 | 0.79511951 | down | bHLH transcription factor |
The absolute values of the log2Ratio (LT/CK) > 1 and probability > 0.7 were used as threshold for assigning significance. CK control, LT 4 °C treatment