Table 1. Summary statistics for Illumina sequencing data and mapping to the pigeonpea genome.
Tissues | Days after flowering (DAA) | Raw reads | Filtered reads | Mapped | Mapping rate |
---|---|---|---|---|---|
Embryo sac | 0 | 88,258,170 | 81,488,665 | 78,735,124 | 96.62% |
Seed | 5 | 72,892,594 | 66,891,663 | 64,421,509 | 96.31% |
Pod shell | 68,166,862 | 62,886,396 | 60,819,898 | 96.71% | |
Seed | 10 | 82,806,502 | 76,881,629 | 74,386,738 | 96.75% |
Pod shell | 68,838,304 | 63,840,679 | 61,447,041 | 96.25% | |
Seed | 20 | 94,557,904 | 87,896,111 | 80,898,608 | 92.04% |
Pod shell | 79,700,848 | 74,196,201 | 71,391,941 | 96.22% | |
Seed | 30 | 58,976,156 | 53,835,089 | 51,424,473 | 95.52% |
Pod shell | 69,799,824 | 64,959,502 | 62,414,455 | 96.08% | |
Total | 683,997,164 | 632,875,935 | 605,939,787 |