Table 1.

Genotype frequencies (p _x) of the identified SNPs in the promoter of the pPAG2-L gene subfamily in crossbreed pigs

SNP locus (IUPAC code)a		SNP locus acc. DNASISb	Genotypes and frequencies (p x)
			Genotype	p x	Genotype	p x	Genotype	p x
F1 region
1)	g.-91C>T (Y)	g.1111C>T	CC	0.45	CT	0.55	TT	0.0
2)	g.-95C>G (S)	g.1107C>G	CC	0.45	CG	0.55	GG	0.0
3)	g.-101/102->INSG	g.1100/1101->InsG	GG	1.0	–/–	0.0	–/–	0.0
4)	g.-117A>T (W)	g.1085A>T	AA	0.57	AT	0.43	TT	0.0
5)	g.-168C>T (Y)	g.1034C>T	CC	0	CT	1.0	TT	0.0
6)	g.-202T>G (K)	g.1000T>G	TT	0.56	TG	0.44	GG	0.0
7)	g.-213T>G (K)	g.989T>G	TT	0.14	GT	0.86	GG	0.0
8)	g.-221G>C (S)	g.981G>C	GG	0.14	CG	0.86	CC	0.0
9)	g.-253G>C (S)	g.949G>C	GG	0.17	CG	0.83	CC	0.0
10)	g.-260C>G (S)	g.942C>G	CC	0.0	CG	1.0	GG	0.0
11)	g.-276T>C (Y)	g.926T>C	TT	0.0	CT	1.0	CC	0.0
12)	g.-316A>G (R)	g.886A>G	AA	0.2	AG	0.2	GG	0.6
13)	g.-417C>A (M)	g.785C>A	CC	0.0	AC	1.0	AA	0.0
F2 region
14)	g.-820C>A (M)	g.382C>A	CC	0.2	AC	0.4	AA	0.4
15)	g.-924G>A (R)	g.278G>A	GG	0.71	AG	0.29	AA	0.0
16)	g.-929A>T (W)	g.273A>T	AA	0.71	AT	0.29	TT	0.0
17)	g.-931A>C (M)	g.271A>C	AA	0.71	AC	0.29	CC	0.0
18)	g.-954A>G (R)	g.248A>G	AA	0.0	AG	1.0	GG	0.0
19)	g.-957A>G (R)	g.245A>G	AA	0.0	AG	1.0	GG	0.0
20)	g.-959G>A (R)	g.243G>A	GG	0.0	AG	1.0	AA	0.0
21)	g.-968A>C (M)	g.234A>C	AA	0.12	AC	0.82	CC	0.06
22)	g.-981C>G (S)	g.221C>G	CC	0.76	CG	0.24	GG	0.0
23)	g.-982T>G (K)	g.220T>G	TT	0.76	GT	0.24	GG	0.0
24)	g.-983T>C (Y)	g.219T>C	TT	0.76	CT	0.24	CC	0.0
25)	g.-984T>A (W)	g.218T>A	TT	0.76	AT	0.24	AA	0.0
26)	g.-985G>T (K)	g.217G>T	GG	0.76	GT	0.24	TT	0.0
27)	g.-986T>A (W)	g.216T>A	TT	0.0	AT	1.0	AA	0.0
28)	g.-990C>G (S)	g.212C>G	CC	0.82	CG	0.18	GG	0.0
29)	g.-1024T>C (Y)	g.178T>C	TT	0.82	CT	0.18	CC	0.0
30)	g.-1029A>G (R)	g.173A>G	AA	0.82	AG	0.18	GG	0.0
31)	g.-1100G>A (R)	g.102G>A	GG	0.88	AG	0.12	GG	0.0
32)	g.-1101T>C (Y)	g.101T>C	TT	0.88	CT	0.12	CC	0.0

^aNumbering of SNPs submitted in dbSNP/NCBI database

^bNumbering according to promoter sequence U39198, GenBank (Szafranska et al. 2001)