Table 1. Distribution of miRNA reads from winged and wingless S. avenae.
| Parameter | Winged | % | Wingless | % |
|---|---|---|---|---|
| Raw reads | 13,760,466 | 100 | 15,594,991 | 100 |
| 3ADT and length filter | 769,767 | 43.3 | 911,013 | 44.1 |
| Short reads | 12,324 | 0.69 | 14,883 | 0.72 |
| Rfam | 104,957 | 5.9 | 104,038 | 5.04 |
| Repeats | 6,097 | 0.34 | 5,139 | 0.25 |
| rRNA | 42,852 | 0.31 | 46,219 | 0.3 |
| tRNA | 29,186 | 0.21 | 28,230 | 0.18 |
| snoRNA | 6,613 | 0.05 | 5,584 | 0.04 |
| snRNA | 7,070 | 0.05 | 6,371 | 0.04 |
| Other Rfam RNA | 19,236 | 0.14 | 17,634 | 0.11 |
| Mappable reads | 887,980 | 49.95 | 1,033,351 | 50.02 |
3ADT: reads removed due to 3ADT not found and length with <15 nt and >30 nt were removed.
Short reads: >=2N, >=7A, >=8C, >=6G, >=7T, >=10Dimer, >=6Trimer, or >=5Tetramer (N is undetermined nucleotide).
Rfam: Collection of many common non-coding RNA families except micro RNA.
Repeats: Prototypic sequences representing repetitive DNA from different eukaryotic species.
Mappable reads: reads that were passed through a series of the digital filters from the raw reads.