Table 3. Selection of plant virus VANA-contigs and VANA-reads recovered from cowpea plants collected in Burkina Faso.
| Plant sample | Agroclimatic zone/Province | Contig/read length (bp) | Number of reads in contig | Results from BlastX search | ||||
|---|---|---|---|---|---|---|---|---|
| Virus/Accession number | Viral family/genus | Locus | Percent identity | e-value | ||||
| BE57 | Sahel/Yatenga | 335 | 11 | CABMV/CAA76872 | Potyviridae / Potyvirus | polypeptide | 88 | 6e-20 |
| BE57 | 287 | 1 | CABMV/AGK29853 | Potyviridae / Potyvirus | CP | 100 | 1e-51 | |
| BE57 | 5408 | 1818 | CABMV/AEB34825 | Potyviridae / Potyvirus | polyprotein (CP) | 89.2 | 0.0 | |
| BE4 | Sudan sahel/Kadiogo | 1352 | 206 | BCMV/CAC86161 | Potyviridae / Potyvirus | unknown protein (polyprotein) | 99 | 0.0 |
| BE4 | 411 | 12 | BCMV/NP_734117 | Potyviridae / Potyvirus | CI protein | 98.5 | 6e-72 | |
| BE4 | 245 | 1 | BCMV/AGL95882 | Potyviridae / Potyvirus | CP | 95 | 6e-48 | |
| BE256 | Sudan/Comoe | 2239 | 257 | CABMV/AIZ48757 | Potyviridae / Potyvirus | polyprotein | 88 | 0.0 |
| BE256 | 1195 | 256 | CABMV/AEB34826 | Potyviridae / Potyvirus | polyprotein | 84 | 0.0 | |
| BE256 | 298 | 1 | CABMV/ADX94778 | Potyviridae / Potyvirus | CP | 96.8 | 1e-59 | |
| BE250 | Sudan/Comoe | 427 | 8 | SCPMV/NP_042301 | Sobemovirus | Polyprotein P2a | 96 | 4e-21 |
| BE250 | 646 | 157 | SCPMV/NP_042300 | Sobemovirus | putative MP | 90 | 3e-111 | |
| BE250 | 3437 | 1070 | SCPMV/AAA46565 | Sobemovirus | CP | 98 | 0.0 | |
| BE167 | Sudan sahel/Gourma | 1440 | 126 | aBrYV/ADW41603 | Luteoviridae / Polerovirus | P1-2 fusion protein | 68 | 0.0 |
| BE167 | 850 | 336 | bBWYV/ADR74374 | Luteoviridae / Polerovirus | P3-P5 readthrough protein domain | 82 | 7e-139 | |
| BE167 | 769 | 8 | cGRAV/AAG29927 | Luteoviridae / Polerovirus | CP | 77.8 | 7e-63 | |
| BE179 | Sudan sahel/Gourma | 313 | 1 | eCpCSV/AEI55842 | Luteoviridae / Polerovirus | P3-P5 | 72 | 4e-44 |
| BE179 | 309 | 1 | dPBMYV/ALO61879 | Luteoviridae / Polerovirus | RdRp | 89 | 8e-33 | |
| BE179 | 295 | 2 | fCABYV/AEH27577 | Luteoviridae / Polerovirus | CP | 78 | 1e-42 | |
| BE120 | Sudan sahel/Sanmatenga | 254 | 1 | gFgMTV1/AMN92730 | Tymoviridae / Mycotymovirus | Replication associated polyprotein | 60 | 7e-26 |
| BE120 | 513 | 3 | gFgMTV1/AMN92730 | Tymoviridae / Mycotymovirus | Replication associated polyprotein | 51 | 2e-22 | |
| BE273 | Sudan/Poni | 1504 | 772 | CPMoV/AAC54603 | Tombusviridae / Carmovirus | RNA replicase | 97 | 0.0 |
| BE273 | 578 | 289 | CPMoV/NP_619521 | Tombusviridae / Carmovirus | replicase RdRp | 97 | 2e-124 | |
| BE273 | 498 | 25 | CPMoV/NP_613271 | Tombusviridae / Carmovirus | CP | 65 | 4e-22 | |
| BE81 | Sahel/Soum | 487 | 6 | hMCMV/AKQ24598 | Tombusviridae / Machlomovirus | putative replicase | 39 | 1e-23 |
| BE81 | 334 | 6 | iSgCV/NP_044384 | Tombusviridae / Carmovirus | SCVP57 | 48 | 1e-26 | |
| BE81 | 304 | 1 | kVTMV/AFN89806 | Sobemovirus | CP | 43 | 0.002 | |
| BE158 | Sudan sahel/Oubritenga | 204 | 1 | jBBSV/CBA34987 | Tombusviridae / Betanecrovirus | RdRp | 47 | 3e-11 |
| BE137 | Sudan sahel/Sanmatenga | 237 | 1 | hMCMV/AMD02991 | Tombusviridae / Machlomovirus | putative replicase | 44 | 6e-04 |
a: Brassica yellows virus,
b: Beet western yellows virus,
c: Groundnut rosette assistor virus,
d: Phasey bean mild yellows virus,
e: Chickpea chlorotic stunt virus,
f: Cucurbit aphid borne yellow virus,
g: Fusarium graminearum mycotymovirus 1,
h: Maize chlorotic mottle virus,
i: Saguaro cactus virus,
j: Beet black scorch virus,
k: Velvet tobacco mottle virus