Table 3. RNA editing pattern in Utricularia reniformis cp genome identified by RNAseq reads alignment.
Gene | Genome (cp) | Codon | Codon position | Amino acid | Editing level | |||
---|---|---|---|---|---|---|---|---|
Position | Strand | from | to | from | to | U/C (%) | ||
atpA | 129,471 | + | CAC | UAC | 1 | H | Y | 15 |
psaB | 102,612 | - | CCU | UCU | 1 | P | S | 20 |
petB | 68,312 | - | CCA | UCA | 1 | P | S | 99 |
rpoA * | 65,985 | + | AAC | AAU | 3 | N | N | 11 |
rpoB † | 115,658 | + | UCU | UUU | 2 | S | F | 81 |
rps2 | 124,300 | + | ACA | AUA | 2 | T | I | 99 |
rps14 | 103,606 | + | CCA | UCA | 2 | P | S | 85 |
* synonymous substitution
† Also predicted by PREP-Cp