Table 5. Distribution of the cpSSRs present in the U. reniformis cp coding regions.

cpSSR type	Genes	Pseudogenes
mono-repeats	accD, atpB, atpF, ccsA, clpP, matK, petA,psaA, psaI, psbB, psbC, psbF, psbK, psbT, rpl14, rpl20, rpl2, rpl22, rpoA, rpoB, rpoC1, rpoC2, rps11, rps3, rps8, ycf1, and ycf2	ycf68, orf56, ndhA, ndhB, ndhD, ndhI and ndhG
di-repeats	petA (AT), psaA (TC), rpoB (TA), rpoC2 (AT), and ycf2 (TA)	ndhB (AG)
tri-repeat (TTC)	psbC
compound/polymorphic	ccsA, psaA, rpl32, rpoC2, rps4, rps7, rps14, rps15, rps18, rps19, ycf1, and ycf2	ndhA and ndhI