Table 1.

Types of samples curated

Sample type	Gene expression platform	Sample identifiers
Microenvironment cell populations	Affymetrix Human Genome 133 Plus 2.0	Additional file 1: Table S1 GEO accession number GSE86362
Microenvironment cell populations	Affymetrix Human Genome 133A	Additional file 1: Table S4 GEO accession number GSE86363
Microenvironment cell populations	Affymetrix HuGene 1.0 ST	Additional file 1: Table S5 GEO accession number GSE86357
In vitro RNA mixtures	Affymetrix Human Genome 133 Plus 2.0	Additional file 1: Table S11 GEO accession number GSE64385
Non-diseased human tissues	Affymetrix Human Genome 133 Plus 2.0	Additional file 1: Table S14 GEO accession number GSE7307
Non-hematopoietic tumors	Affymetrix Human Genome 133 Plus 2.0	Additional file 1: Table S7
Non-hematopoietic tumors	Affymetrix Human Genome 133A	Additional file 1: Table S8
Non-hematopoietic tumors	Illumina HiSeq 2000	Additional file 1: Table S9
Non-hematopoietic tumors	Other gene expression platforms	Additional file 1: Table S11