Table 3.

The average size of top 50 highly discriminative subnetwork markers from GSE2034 and NKI295

Gene expression dataset = GSE2034
		Chuang	HPRD	GASOLINE	BioGRID
Greedy		3.1	3.26	3.54	3.66
AP-based		36.28	35.78	34.18	38.78
jac_p		18.06	19.94	19.58	29
kul_p		21.16	25.32	22.48	36.28
tve_p		34.48	45.26	45.98	61.8
jac_lc	β=0.25	18.3	21.36	23.14	34
	β=0.5	15.08	15.38	16.44	24.24
	β=0.75	13.28	16.34	13.44	19.18
kul_lc	β=0.25	24	30.14	28.68	39.02
	β=0.5	18.98	22.86	24.18	38.32
	β=0.75	16.06	19.12	20.84	30.98
tve_lc	β=0.25	34.1	46.58	43.44	53.54
	β=0.5	28.98	43.8	45.5	71.24
	β=0.75	22.92	44.78	46.32	82.66
Gene expression dataset = NKI295
		Chuang	HPRD	GASOLINE	Biogrid
Greedy		4.12	3.68	4.46	4.42
AP-based		31.34	30.32	28.78	34.66
jac_p		14.62	16	18.94	27.72
kul_p		12.3	22.5	26.9	33.34
tve_p		28.22	42.24	49.9	57.1
jac_lc	β=0.25	15.14	16.8	19.66	30.06
	β=0.5	13.38	12.44	13.68	22.66
	β=0.75	11.54	12.88	10.78	17.98
kul_lc	β=0.25	14.8	24.6	27.06	39.26
	β=0.5	15.9	18.5	23.28	33.96
	β=0.75	13.7	17.12	17.22	27.14
tve_lc	β=0.25	30.76	41.78	48.66	52.44
	β=0.5	27.26	41.62	50.7	72.88
	β=0.75	18.52	43.22	48.24	81.42