Table 4.

The number of unique genes in top 50 highly discriminative subnetwork markers from GSE2034 and NKI295

Gene expression dataset = GSE2034
		Chuang	HPRD	GASOLINE	Biogrid
Greedy		130	121	140	139
AP-based		1814	1789	1709	1939
jac_p		903	997	979	1450
kul_p		1058	1266	1124	1814
tve_p		1724	2263	2299	3090
jac_lc	β=0.25	915	1068	1157	1700
	β=0.5	754	769	822	1212
	β=0.75	664	817	672	959
kul_lc	β=0.25	1200	1507	1434	1951
	β=0.5	949	1143	1209	1916
	β=0.75	803	956	1042	1549
tve_lc	β=0.25	1705	2329	2172	2677
	β=0.5	1449	2190	2275	3562
	β=0.75	1146	2239	2316	4133
Gene expression dataset = NKI295
		Chuang	HPRD	GASOLINE	Biogrid
Greedy		114	110	118	150
AP-based		1567	1516	1439	1733
jac_p		731	800	947	1386
kul_p		615	1125	1345	1667
tve_p		1411	2112	2495	2855
jac_lc	β=0.25	757	840	983	1503
	β=0.5	669	622	684	1133
	β=0.75	577	644	539	899
kul_lc	β=0.25	740	1230	1353	1963
	β=0.5	795	925	1164	1698
	β=0.75	685	856	861	1357
tve_lc	β=0.25	1538	2089	2433	2622
	β=0.5	1363	2081	2535	3644
	β=0.75	926	2161	2412	4071