Table I. Differentially expressed genes related to hormone signaling in OsNPR1-OX compared with the wild type.

R1, R2, and R3 indicate three replicates.

Hormone	Locus Identifier	Gene Product Name	Signal Log2 Ratio
			R1	R2	R3
Auxin	LOC_Os01g56240	OsSAUR2, auxin-responsive SAUR gene family member, expressed	5.5	4.0	2.9
	LOC_Os03g58350	OsIAA14, auxin-responsive Aux/IAA gene family member, expressed	−2.1	−4.7	−3.4
	LOC_Os04g03980	OsYUCCA7, flavin monooxygenase, putative, expressed	−2.7	−5.9	−1.8
	LOC_Os07g08460	OsIAA24, auxin-responsive Aux/IAA gene family member, expressed	−3.1	−3.8	−1.8
	LOC_Os07g40290	OsGH3.8, probable IAA-amido synthetase, expressed	3.8	2.4	2.0
	LOC_Os09g37330	OsSAUR39, auxin-responsive SAUR gene family member, expressed	−3.4	−1.5	−2.3
	LOC_Os11g14190	ARGOS, putative, expressed	−1.5	−1.1	−2.2
Cytokinin	LOC_Os02g35180	OsRR2 type A response regulator, expressed	−1.1	−1.2	−1.9
	LOC_Os02g51930	Cytokinin-O-glucosyltransferase2, putative, expressed	1.2	2.7	1.0
	LOC_Os04g36070	OsRR1 type A response regulator, expressed	−1.7	−1.1	−2.4
	LOC_Os06g11720	Cytokinin-O-glucosyltransferase2, putative, expressed	5.0	2.3	3.2
	LOC_Os11g04720	OsRR10 type A response regulator, expressed	−1.1	−1.0	−1.4
GA	LOC_Os03g57640	GA receptor GID1L2, putative, expressed	1.6	1.9	2.8
	LOC_Os06g15620	GASR7, GA-regulated GASA/GAST/Snakin family protein precursor, expressed	1.4	2.3	4.3
	LOC_Os07g06830	GA receptor GID1L2, putative, expressed	3.3	1.3	1.9
	LOC_Os07g36170	Chitin-inducible GA-responsive protein, putative, expressed	1.9	1.5	1.9
	LOC_Os07g39470	GA response modulator protein, putative, expressed	1.9	1.3	1.7
Brassinosteroid	LOC_Os06g12120	BRASSINOSTEROID INSENSITIVE1-ASSOCIATED RECEPTOR KINASE1	2.7	1.2	1.1
	LOC_Os06g16300	BRASSINOSTEROID INSENSITIVE1-ASSOCIATED RECEPTOR KINASE1	1.3	1.4	1.0
	LOC_Os07g40630	BRASSINOSTEROID INSENSITIVE1 precursor	3.1	2.1	4.9