Table II. Properties of the genome-scale model for C. vulgaris (iCZ843) and other prokaryotic and eukaryotic organisms shown for comparisona.
| Microorganism | Synechocystis sp. PCC6803 | Z. mays | C. reinhardtii | C. pyrenoidosa | Chlorella sp. FC2 IITG | C. protothecoides | C. variabilis | C. vulgaris UTEX 395 |
|---|---|---|---|---|---|---|---|---|
| Reconstruction | Genomic | Genomic | Genomic | Biochemical | Biochemical | Genomic | Genomic | Genomic |
| Genome size | 3.57 Mb | 2.4 Gb | 100 Mb | ND | 46.2 Mb | 22.9 Mb | 46.2 Mb | 63 Mb |
| Genes in the model (total genes/proteins) | 678 (3,575) | 1,563 (32,540) | 1,073 (14,354) | 0 | 0 | 461 (7,039) | 526 (9,791) | 843 (7,100) |
| Total reactions | 863 | 1,985 | 2,190 | 67 | 159 | 272 | 1,455 | 2,286 |
| Metabolites | 790 | 1,825 | 1,707 | 61 | 114 | 144 | 1,236 | 1,770 |
| Compartments | 3 | 5 | 10 | 1 | 1 | 4 | 6 | 6 |
| Reference | Nogales et al. (2012) | Saha et al. (2011) | Chang et al. (2011) | Yang et al. (2000) | Muthuraj et al. (2013) | Wu et al. (2015) | Juneja et al. (2016) | This work |
aBased on the genome, but the gene association is not shown in the model. ND, Not determined.