Table 2. GO terms associated with SNP density.
| SNP density | Change from the baseline | log(P-value) | GO ID | Namespace | Name |
|---|---|---|---|---|---|
| GO terms for the conserved genes | |||||
| 5.40% | −19.50% | −50 | GO:0006355 | Biological process | regulation of transcription, DNA-templated |
| 5.40% | −19.50% | −49 | GO:0003677 | Molecular function | DNA binding |
| 5.10% | −23.97% | −42 | GO:0003700 | Molecular function | transcription factor activity, sequence-specific DNA binding |
| 5.10% | −23.97% | −27 | GO:0043565 | Molecular function | sequence-specific DNA binding |
| 5.20% | −22.48% | −19 | GO:0046983 | Molecular function | protein dimerization activity |
| 5.60% | −16.52% | −17 | GO:0006351 | Biological process | transcription, DNA-templated |
| 5.30% | −20.99% | −12 | GO:0003682 | Molecular function | chromatin binding |
| 5.70% | −15.03% | −12 | GO:0003676 | Molecular function | nucleic acid binding |
| 6.20% | −7.58% | −11 | GO:0005634 | Cellular component | nucleus |
| GO terms for the variable genes | |||||
| 7.30% | 8.82% | −27 | GO:0016020 | Cellular component | membrane |
| 7.50% | 11.80% | −26 | GO:0005524 | Molecular function | ATP binding |
| 7.30% | 8.82% | −24 | GO:0005886 | Cellular component | plasma membrane |
| 7.30% | 8.82% | −18 | GO:0000166 | Molecular function | nucleotide binding |
| 7.40% | 10.31% | −17 | GO:0005829 | Cellular component | cytosol |
| 7.30% | 8.82% | −16 | GO:0016021 | Cellular component | integral component of membrane |
| 7.50% | 11.80% | −15 | GO:0016772 | Molecular function | transferase activity, transferring phosphorus-containing groups |
| 7.60% | 13.29% | −15 | GO:0005794 | Cellular component | Golgi apparatus |
| 7.70% | 14.78% | −15 | GO:0004674 | molecular function | protein serine/threonine kinase activity |
| 7.50% | 11.80% | −14 | GO:0004672 | Molecular function | protein kinase activity |
| 7.50% | 11.80% | −14 | GO:0006468 | Biological process | protein phosphorylation |
| 7.30% | 8.82% | −13 | GO:0003824 | Molecular function | catalytic activity |
| 7.10% | 5.84% | −11 | GO:0009507 | Cellular component | chloroplast |
| 7.20% | 7.33% | −11 | GO:0016740 | Molecular function | transferase activity |
| 7.40% | 10.31% | −11 | GO:0016301 | Molecular function | kinase activity |
| 7.40% | 10.31% | −11 | GO:0016310 | Biological process | phosphorylation |
| 7.60% | 13.29% | −11 | GO:0055085 | Biological process | transmembrane transport |
| 7.30% | 8.82% | −10 | GO:0006810 | Biological process | transport |
| 7.40% | 10.31% | −10 | GO:0009570 | Cellular component | chloroplast stroma |
| 8.10% | 20.75% | −10 | GO:0005802 | Cellular component | trans-Golgi network |
| 8.40% | 25.22% | −10 | GO:0006200 | Biological process | obsolete ATP catabolic process |
| 8.50% | 26.71% | −10 | GO:0016887 | Molecular function | ATPase activity |
Analysis was performed on the 29M dataset; average mRNA mutation density is 6.7%.