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. 2016 Oct 24;6:35759. doi: 10.1038/srep35759

Table 1. B19 genotype 1 nucleotide substitution rate.

Data seta analyzed partitions (nt)b Clock modelc Log Marginal Likelihoodd Nucleotide substitution rate (10−4 substitutions/site/year)
Mean ± S.E. HPD
cDNA 665–4851 Relaxed exponential −17913    
substitution model TIM3 + I + G Relaxed lognormal −18250    
    Strict −16535 1.03 ± 0.01 0.56–1.27
NS1 667–2631 Relaxed exponential −8935    
substitution model TIM3 + I + G Relaxed lognormal −8925    
    Strict −7965 1.36 ± 0.01 0.73–1.75
VP1 2624–4851 Relaxed exponential −10604    
substitution model TIM3 + I + G Relaxed lognormal −10606    
    Strict −9658 1.64 ± 0.01 1.00–2.00
uVP1 2624–3305 Relaxed exponential −3836    
substitution model TPM3 + I + G Relaxed lognormal −3837    
    Strict −2847 1.11 ± 0.03 0.04–3.10
VP2 3305–4851 Relaxed exponential −8448    
substitution model TrN + I + G Relaxed lognormal −8476    
    Strict −7486 2.32 ± 0.01 1.53–2.86

a131 isolates used in analyses listed in Table S1a.

bnumbered according to the reference sequence NC_000883.2.

ccoalescent tree prior for all analyses was Bayesian Skygrid.

dLog Marginal Likelihood obtained using Stepping Stone Sampling; Abbreviations: HPD - Highest Posterior Density interval contains 95% of posterior probability distribution of nucleotide substitution rate, S.E. – standard error of mean.