Table 1.
Genes of interest included in the RT-PCR analysis of duodenal mucosa
| Gene Symbol | Refseq No. | Official Full Name |
|---|---|---|
| ACTB | NM_001101 | Actin, beta (house-keeping gene [HKG]) |
| C4BPA | NM_000715 | Complement component 4 binding protein, alpha |
| CCL20 | NM_004591 | Chemokine (C-C motif) ligand 20 |
| CLDN1 | NM_021101 | Claudin 1 |
| FGFR4 | NM_002011 | Fibroblast growth factor receptor 4 |
| FN1 | NM_002026 | Fibronectin 1 |
| GAPDH | NM_002046 | Glyceraldehyde-3-phosphate dehydrogenase (HKG) |
| GPBAR1 | NM_170699 | G protein-coupled bile acid receptor 1 |
| GUCA2B | NM_007102 | Guanylate cyclase activator 2B (uroguanylin) |
| HGDC | SA_00105 | Human genomic DNA contamination |
| IFIT3 | NM_001549 | Interferon-induced protein with tetratricopeptide repeats 3 |
| NR1H4 | NM_005123 | Nuclear receptor subfamily 1, group H, member 4 |
| OCLN | NM_002538 | Occludin |
| P2RY4 | NM_002565 | Pyrimidinergic receptor P2Y, G-protein coupled, 4 |
| PDZD3 | NM_024791 | PDZ domain containing 3 |
| PPC | SA_00103 | Positive PCR control |
| RBP2 | NM_004164 | Retinol binding protein 2, cellular |
| RTC | SA_00104 | Reverse transcription control |
| SLC6A4 | NM_001045 | 5-HT transporter |
| SLC10A2 | NM_000452 | Solute carrier family 10 member 2 (sodium/bile acid cotransporter) |
| TFF1 | NM_003225 | Trefoil factor 1 |
| TJP1 | NM_175610 | Tight junction protein 1 (zona occludens 1) |
| TNFSF15 | NM_005118 | Tumor necrosis factor (ligand) superfamily, member 15 |
| VIP | NM_003381 | Vasoactive intestinal peptide |
| IFNG | NM_000619 | Interferon-gamma |
| MYLK | NM_053025 | Myosin light chain kinase |
| SLC9A1 | NM_003047 | Na+-H+-exchange protein |
| B2M | NM_004048 | Beta 2 microglobulin (HKG) |
| CALR | NM_004343 | CALReticulin |
| CD3E | NM_000733 | CD3-epsilon chain |
| CD74 | NM_004355 | HLA-DR antigen-associated invariant chain |
| CLDN2 | NM_020384 | Claudin 2 |
| CLDN3 | NM_001306 | Claudin 3 |
| CLDN4 | NM_001305 | Claudin 4 |
| CLDN7 | NM_001307 | Claudin 7 |
| CLDN12 | NM_012129 | Claudin 12 |
| CLDN15 | NM_014343 | Claudin 15 |
| CLDN16 | NM_006580 | Claudin 16 |
| CPSF1 | NM_013291 | Cleavage and polyadenylation specific factor 1 |
| CTNNA1 | NM_001903 | Catenin (cadherin-associated protein), alpha 1 |
| CTNNB1 | NM_001904 | Catenin (cadherin-asociated protein), beta1 |
| DLG1 | NM_004087 | Discs, large homolog 1 (Drosophila) |
| FOXP3 | NM_014009 | Forkhead box p3 |
| HAAO | NM_012205 | Kydroxyanthranilic acid oxygenase (3-hydroxyanthranilate 3,4-dioxygenase) |
| HNMT | NM_006895 | Histamine N-methyltransferase |
| HRH1 | NM_000861 | Histamine receptor 1 |
| HRH2 | NM_022304 | Histamine receptor 2 |
| IDO1 | NM_002164 | Indoleamine 2,3-dioxygenase |
| IDO2 | NM_194294 | Indoleamine 2,3-dioxygenase 2 |
| IL1B | NM_000576 | Interleukin-1beta |
| IL2RA | NM_000417 | (CD25) Interleukin-2 receptor subunit alpha |
| IL4 | NM_000589 | Interleukin 4 |
| IL6 | NM_000600 | Interleukin-6 |
| IL8 | NM_000584 | Interleukin-8 |
| IL10 | NM_000572 | Interleukin-10 |
| IL13 | NM_002188 | Interleukin-13 |
| IL15 | NM_000585 | Interleukin-15 |
| IL17A | NM_002190 | Interleukin-17A |
| INADL | NM_176877 | InaD-like (Drosophila) |
| AADAT | NM_182662 | Kynurenine aminotransferase 2 (alias KAT2) |
| CCBL2 | NM_001008661 | Kynurenine aminotransferase 3 (alias KAT3) |
| GOT2 | NM_002080 | Kynurenine aminotransferase 4 (alias KAT4) |
| KITLG | NM_003994 | Kit-ligand, stem cell factor |
| KMO | NM_003679 | Kynurenine 3-monooxygenase |
| KYNU | NM_003937 | Kyureninase |
| MAGI1 | NM_004742 | Membrane-associated guanylate kinase, WW and PDZ domain containing 1 |
| MPP5 | NM_022474 | Membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5) |
| MPP7 | NM_173496 | Membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7) |
| PPP1CB | NM_002709 | Protein phosphatase 1, catalytic subunit, beta isozyme |
| PPP2R5C | NM_001161725 | Protein phosphatase 2, regulatory subunit beta |
| PRG2 | NM_002728 | Major basic protein |
| PVRL3 | NM_015480 | Poliovirus signaling-related 3 |
| QPRT | NM_014298 | Quinolinic acid phosphoribosyltransferase |
| TDO2 | NM_005651 | Tryptophan 2,3-dioxygenase |
| TGFB1 | NM_000660 | Transforming growth factor beta |
| TJP2 | NM_004817 | Zona occludens 2 |
| TJP3 | NM_014428 | Zona occludens 3 |
| TLR1 | NM_003263 | Toll-like receptor 1 |
| TLR2 | NM_003264 | Toll-like receptor 2 |
| TLR3 | NM_003265 | Toll-like receptor 3 |
| TLR4 | NM_138554 | Toll-like receptor 4 |
| TLR5 | NM_003268 | Toll-like receptor 5 |
| TLR6 | NM_006068 | Toll-like receptor 6 |
| TLR7 | NM_016562 | Toll-like receptor 7 |
| TLR8 | NM_138636 | Toll-like receptor 8 |
| TLR9 | NM_017442 | Toll-like receptor 9 |
| TNF | NM_000594 | Tumor necrosis factor-alpha (TNF-a) |
| TNFSF14 | NM_003807 | LIGHT/tumor necrosis factor superfamily 14 |
| TPH1 | NM_004179 | Tryptophan hydroxylase 1 |
| TPSAB1 | NM_003294 | Tryptase |
| TPSB2 | NM_024164 | Tryptase beta 2 (gene/pseudogene) |
| AHR | NM_001621 | Aryl hydrocarbon Rrceptor |
| SOS1 | NM_005633 | Son of Sevenless homolog 1 (Drosophila) |
| MAPKAPK5 | NM_003668 | Mitogen-activated protein kinase-activated protein kinase 5 |
| MKNK2 | NM_017572 | MAP kinase interacting serine/threonine kinase 2 |
| SLC9A3 | NM_004174 | Solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 |
| CFTR | NM_000492 | Cystic fibrosis transmembrane conductance regulator (ATP-binding cassette subfamily c, member 7) |