Table 1.
Gene name | Accession number | Primer | Location for the first nucleotide of the primera | Sequence (from 5′ to 3′) | Annealing temperature (°C) |
---|---|---|---|---|---|
EFNB2 | NM_004093 | Forward for RT-qPCR | Chr13:106,494,962 | GATCCAACAAGACGTCCAGAA | 60 |
Reverse for RT-qPCR | Chr13:106,493,342 | CTGAAGCAATCCCTGCAAATA | |||
3′-UTR Forward for mutationb | Chr13:106,492,317 | CGAGCTCAGTGGGGCTGGGGAAAGGGCT | 58 | ||
3′-UTR Reverse for mutationb | Chr13:106,491,818 | GCTCTAGATGACCTTTGGCTTTTCAAC | |||
rs550067317(C) Forward for mutation | Chr13:106,491,988 | TACTGGCACTAAGATACACAGCTCCGAGCT | 58 | ||
rs550067317(C) Reverse for mutation | Chr13:106,491,972 | GTATCTTAGTGCCAGTACCACAACAGTCCT | |||
GAPDH | NM_002046 | Forward for RT-qPCR | Chr12:6,537,347 | CCAAGGTCATCCATGACAACT | 60 |
Reverse for RT-qPCR | Chr12:6,537,683 | CAGGGATGATGTTCTGGAGAG | |||
Hsa-miR-137 | NR_029679 | Forward for RT-qPCR | Chr1:98,046,113 | TTATTGCTTAAGAATACGCGTAG | 60 |
U6 snRNA | NR_004394 | Forward for RT-qPCR | Chr15:67,840,042 | CTCGCTTCGGCAGCACA | 60 |
Reverse for RT-qPCR | Chr15:67,839,949 | AACGCTTCACGAATTTGCGT |
UCSC Browser, Dec. 2013; http://genome,ucsc.edu/cgi-bin/hgGateway.
Several nucleotides (restriction enzyme cutting site) have been added to the 5′ terminal of the primer.