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. Author manuscript; available in PMC: 2016 Oct 25.
Published in final edited form as: Proteins. 2010 Oct 11;78(16):3409–3427. doi: 10.1002/prot.22848

Table 6.

Composite scoring function which integrates the deviation of the experimental constraints from the theoretical maximum distance as well as the Rosetta energy and compactness of the structure

Score=LNXi,maxXiXi,maxXi,opt
With
Optimal Xopt Maximal allowed Xmax
Chemical Cross-Link <19 Å <24 Å
Disulfide <8 Å <13 Å
Energy (bk_tot) <−250 <−180
Compactness (SASA) <15.000 <20.000

If Xi<Xopt than Xi,maxXiXi,maxXi,opt was set to 1, where else in the case Xi>Xmax the term was set to 0.05.