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. Author manuscript; available in PMC: 2016 Oct 26.
Published in final edited form as: Nat Protoc. 2014 Jan 23;9(2):439–456. doi: 10.1038/nprot.2014.025

Figure 3. Automatically generated model summary file.

Figure 3

The function abc-sysbio-sum reads the sbml model file and extracts all model specific information. The file contains the (always included) number of compartments and reactions. Some models also contain rules, functions and events. The file acts as a ‘dictionary’ for all ABC-SysBio steps. The software renames parameters and species. In the second column are the original sbml identifiers, while the new names are in the third column. The numbers in brackets denote the default values as defined in the sbml model file.