Table 1.
A list of sweep regions, using an outlier approach. Only regions with CLR2B values larger than the genomewide 99.8% quantile are shown. Consecutive outlier CLR2B values are merged to a single sweep region. The overlap with previous scans is tabulated using compiled data from Akey (2009)
| Chromosome | Position (Mbp) | Max CLR2B | Percentile rank CLR2B | Genes with outlier CLR2B | Gene closest to CLR2B peak | Distance between CLR2B peak and closest gene (Mbp) | Max CLR1 | Percentile rank CLR1 | Overlap LD‐scans | Overlap SFS‐scans | Overlap FST‐scans | Overlap Any |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4 | 33.6 | 1026 | 0.0000 | ARAP2 | 2.154 | 681 | 0.0001 | Yes | Yes | Yes | ||
| 10 | 23.9 | 622 | 0.0001 | OTUD1, KIAA1217 | OTUD1 | 0.105 | 642 | 0.0002 | ||||
| 19 | 20.3 | 582 | 0.0005 | LOC284441, ZNF826 | ZNF826 | 0.026 | 17 | 0.0884 | ||||
| 7 | 119.4 | 566 | 0.0005 | KCND2 | KCND2 | 0.269 | 382 | 0.0021 | Yes | Yes | Yes | |
| 2 | 195.0 | 503 | 0.0005 | SLC39A10 | 1.204 | 511 | 0.0009 | |||||
| 7 | 72.6 | 496 | 0.0005 | FZD9, BAZ1B, BCL7B | BCL7B | 0 | 24 | 0.0749 | ||||
| 4 | 60.7 | 485 | 0.0006 | LPHN3 | 1.348 | 599 | 0.0005 | Yes | Yes | |||
| 1 | 1.2 | 451 | 0.0006 | SCNN1D, PUSL1, GLTPD1, TAS1R3, UBE2J2, LOC100128842, ACAP3, CPSF3L, DVL1 | SCNN1D | 0 | 367 | 0.0024 | ||||
| 3 | 98.7 | 443 | 0.0007 | EPHA6 | EPHA6 | 0 | 173 | 0.0126 | Yes | Yes | Yes | |
| 15 | 27.2 | 435 | 0.0007 | GOLGA8G, GOLGA8F, WHAMML2, APBA2, HERC2, FAM189A1 | FAM189A1 | 0 | 144 | 0.0166 | Yes | Yes | Yes | Yes |
| 8 | 16.2 | 429 | 0.0007 | MSR1 | 0.141 | 241 | 0.0070 | Yes | Yes | Yes | ||
| 16 | 32.4 | 429 | 0.0007 | SLC6A10P | 0.347 | 1 | 0.3293 | |||||
| 8 | 50.6 | 421 | 0.0007 | SNTG1 | SNTG1 | 0.345 | 361 | 0.0025 | Yes | Yes | Yes | Yes |
| 13 | 64.6 | 407 | 0.0007 | PCDH9 | 1.155 | 341 | 0.0029 | |||||
| 12 | 78.9 | 406 | 0.0007 | PPP1R12A | PPP1R12A | 0.028 | 90 | 0.0288 | ||||
| 5 | 17.7 | 402 | 0.0008 | BASP1 | 0.359 | 8 | 0.1178 | |||||
| 8 | 43.5 | 400 | 0.0008 | CHRNB3, HOOK3, FNTA, SGK196, HGSNAT, POTEA, CHRNA6, THAP1, RNF170 | POTEA | 0.138 | 338 | 0.0029 | ||||
| 3 | 155.7 | 390 | 0.0008 | GPR149 | 0.115 | 387 | 0.0021 | |||||
| 16 | 46.2 | 359 | 0.0009 | PHKB | PHKB | 0 | 443 | 0.0014 | Yes | Yes | Yes | |
| 2 | 13.2 | 357 | 0.0009 | TRIB2 | 0.381 | 290 | 0.0044 | |||||
| 15 | 43.2 | 350 | 0.0010 | DUOX2 | DUOX2 | 0 | 472 | 0.0013 | Yes | Yes | Yes | |
| 19 | 23.1276 | 339 | 0.0010 | ZNF492, ZNF99 | ZNF91 | 0.205 | 356 | 0.0026 | ||||
| 5 | 21.9167 | 333 | 0.0010 | CDH12 | CDH12 | 0 | 241 | 0.0070 | Yes | Yes | ||
| 12 | 87.623 | 332 | 0.0010 | KITLG | 0.125 | 313 | 0.0036 | Yes | Yes | Yes | Yes | |
| 16 | 34.4685 | 325 | 0.0011 | LOC283914, LOC146481 | LOC283914 | 0 | 271 | 0.0052 | ||||
| 8 | 52.5704 | 320 | 0.0011 | PXDNL | PXDNL | 0 | 302 | 0.0040 | Yes | Yes | Yes | |
| 5 | 23.4958 | 312 | 0.0012 | PRDM9 | 0.048 | 402 | 0.0019 | |||||
| 2 | 21.6707 | 310 | 0.0012 | APOB | 0.550 | 148 | 0.0160 | Yes | Yes | |||
| 19 | 47.7082 | 306 | 0.0012 | CXCL17, CEACAM1 | CEACAM1 | 0 | 261 | 0.0058 | Yes | Yes | Yes | Yes |
| 10 | 110.931 | 297 | 0.0013 | XPNPEP1 | 0.683 | 169 | 0.0131 | |||||
| 2 | 88.9951 | 295 | 0.0013 | FLJ40330 | 0.108 | 2 | 0.1873 | |||||
| 9 | 3.55652 | 287 | 0.0015 | RFX3 | RFX3 | 0.041 | 142 | 0.0168 | ||||
| 8 | 54.8804 | 285 | 0.0015 | ATP6V1H | ATP6V1H | 0 | 201 | 0.0098 | ||||
| 16 | 22.2754 | 285 | 0.0015 | CDR2 | CDR2 | 0 | 6 | 0.1289 | Yes | Yes | ||
| 4 | 71.9799 | 284 | 0.0015 | MOBKL1A | 0.007 | 401 | 0.0019 | |||||
| 8 | 36.2623 | 280 | 0.0016 | UNC5D | 0.491 | 13 | 0.1012 | Yes | Yes | Yes | Yes | |
| 13 | 67.3157 | 277 | 0.0016 | PCDH9 | 0.613 | 52 | 0.0464 | Yes | Yes | |||
| 5 | 145.12 | 272 | 0.0018 | PRELID2 | PRELID2 | 0 | 118 | 0.0213 | ||||
| 19 | 11.9993 | 272 | 0.0018 | ZNF433 | ZNF433 | 0 | 300 | 0.0041 | Yes | Yes | Yes | |
| 9 | 98.6497 | 271 | 0.0018 | ZNF782 | ZNF782 | 0 | 263 | 0.0056 | Yes | Yes | Yes | |
| 13 | 88.619 | 271 | 0.0018 | SLITRK5 | 1.489 | 219 | 0.0084 |