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. Author manuscript; available in PMC: 2016 Oct 27.
Published in final edited form as: Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Dec 10;92(6):062709. doi: 10.1103/PhysRevE.92.062709

TABLE I.

Parameter values of the BD-kMC simulation.

Quantity Parameter Value Notes
kBT Thermal energy 4.11 ×10−21 J Room temperature
l MT length 250 nm Chosen
b MT diameter 25 nm Ref. [61]
ϵ Energy scale of the WCA potential kBT Refs. [5557]
η Fluid viscosity 1.0 Pa s Cytoplasmic viscosity, Ref. [62]
ρ Linear density of motor binding sites along MT Appears only in dimensionless concentration
μ m Motor chemical potential Appears only in dimensionless concentration
u 0 Motor binding free energy Appears only in dimensionless concentration
vw Motor speed (zero force) Reference 4.5 μm/s, range 0.14–18 μm/s Of order 1 μm/s, Ref. [50]
k 0 Unbinding rate of motors 28.1 s−1 Processivity of 160 nm, Ref. [63]
fs Stall force 1 pN Ref. [50]
K Motor spring constant 0.013 pN/nm Decreased from Ref. [64] to give appropriate range of motor-mediated interaction for zero-equilibrium-length springs