Table I. The FDR-verified enrichment of GO_CC categories. NS, p > 0.05. NE, not enriched.

GOTERM_CC_FATa	NUCLEOLUSb			NUCLEUS (all identified)c
	Fold Enriched	% List	FDR	Fold Enriched	% List	FDR
GO:0030684∼preribosome	17.77	1.59	1.10E-04	3.36	0.26	NS
GO:0005730∼nucleolus	7.73	16.47	2.94E-47	1.93	3.58	1.67E-13
GO:0000786∼nucleosome	7.45	3.17	2.70E-06	2.32	0.86	0.001155
GO:0005840∼ribosome	7.22	9.52	3.96E-24	2.52	2.90	5.58E-22
GO:0033279∼ribosomal subunit	6.56	2.98	5.76E-05	2.51	0.99	8.55E-06
GO:0000792∼heterochromatin	6.23	2.18	0.010759	2.22	0.68	NS
GO:0005681∼spliceosome	4.66	3.97	6.36E-05	2.92	2.17	1.04E-21
GO:0000785∼chromatin	4.38	4.96	3.13E-06	1.85	1.83	6.27E-05
GO:0005694∼chromosome	3.13	8.13	3.42E-07	1.49	3.37	8.18E-04
GO:0044427∼chromosomal part	2.72	5.95	0.002514	1.47	2.79	0.01671
GO:0005604∼basement membrane	6.72	3.37	3.71E-06	1.43	0.63	NS
GO:0044420∼extracellular matrix part	5.34	3.37	1.21E-04	NE	NE	NE
GO:0005739∼mitochondrion	2.47	22.42	3.12E-17	1.89	14.99	6.36E-66

^a only organelle/structure/complex-specific GO_CC categories are not shown.

^b the analyzed list included 504 mapped IDs of proteins with at least 1.3 fold No enrichment; of them 433 had assigned GO_CC terms.

^c the analyzed list included 3830 mapped IDs, of them 2865 had assigned GO_CC terms.