Table II. The FDR-verified enrichment of GO_BP categories. NS, p > 0.05.

GO_BP_FAT Terma	Nucleolusb			Nucleus (all identified)c
	Fold enriched	% list	FDR	Fold enriched	% list	FDR
GO:0042254∼ribosome biogenesis	13.85	8.73	1.90E-23	2.69	1.70	4.1078E-13
GO:0006396∼RNA processing	12.99	13.89	2.18E-33	2.36	5.80	5.7144E-39
GO:0006364∼rRNA processing	11.50	6.15	0.005802	2.76	1.15	1.5491E-08
GO:0016072∼rRNA metabolic process	11.02	6.15	0.007979	2.72	1.15	2.8768E-08
GO:0006412∼translation	10.86	9.92	2.61E-30	2.60	4.67	2.3355E-38
GO:0034470∼ncRNA processing	9.80	6.75	0.018929	1.67	1.49	NS
GO:0034660∼ncRNA metabolic process	9.60	6.94	0.004574	1.88	2.14	2.82E-06
GO:0051276∼chromosome organization	9.45	8.53	0.024588	1.53	3.47	0.0001808
GO:0006397∼mRNA processing	9.12	6.35	0.031575	2.76	4.07	2.5363E-37
GO:0006333∼chromatin assembly or disassembly	8.97	4.17	2.39E-07	2.38	1.46	4.48E-08
GO:0006325∼chromatin organization	7.25	6.94	5.93E-06	1.62	2.87	9.0115E-05
GO:0006323∼DNA packaging	7.05	3.97	8.79E-06	2.25	1.28	1.062E-05
GO:0016071∼mRNA metabolic process	6.96	6.55	1.07E-05	2.55	4.33	8.101E-34
GO:0008380∼RNA splicing	6.96	5.16	1.07E-05	2.98	3.37	3.5164E-35
GO:0006334∼nucleosome assembly	6.55	3.17	2.39E-07	2.48	1.02	1.759E-05
GO:0031497∼chromatin assembly	6.37	3.17	1.25E-07	2.47	1.04	1.1704E-05
GO:0034728∼nucleosome organization	5.40	3.17	3.74E-04	2.38	1.02	7.316E-05

^a all mitochdria related GO_BP categories were excluded as a potential contamination.

^b the analyzed list included 504 mapped IDs of proteins with at least 1.3 fold No enrichment; of them 411 had assigned GO_BP terms.

^c the analyzed list included 3830 mapped IDs, of them 2930 had assigned GO_BP terms.