Table A1.
Primers used in this study.
Amplicon | Primer | Sequence (5′ to 3′) | Position | Length |
---|---|---|---|---|
Coding region | ||||
oprD | oprD1 | ATCTACCGCACAAACGATGAAGG | 772 | 156 |
oprD2 | GCCGAAGCCGATATAATCAAACG | 927 | ||
oprF | oprF1 | GGTTACTTCCTGACCGACGA | 172 | 664 |
oprF2 | TCGGTGTTGATGTTGGTGAT | 836 | ||
hfq | 263 | GTCAAAAGGGCATTCGCTAC | 3 | 176 |
331 | AGATCGCGTGCTTGTAAACC | 178 | ||
hsp70 | 406 | CCACACCGTGATCGTCTATG | 561 | 185 |
407 | CGCTTTCCTTCTTGAACTCG | 745 | ||
czcR | czcR1 | GTCATCACCCGGACGCAGATCAT | 502 | 153 |
czcR2 | GTAGCCGACGCCGCGAATGGTAT | 654 | ||
phrS | 449 | CAACTGGAGGCCATCAACAT | 21 | 160 |
450 | CCTTGCGTGCTCTGTGTATC | 180 | ||
Promoter | ||||
poprD | poprD R | CGCAGATGCGACATGCGTCA | −178 | 101 |
poprD L | GGCGCTCCACTTCATCACTT | −77 | ||
Primers used for DNA cloning | ||||
Hfq:6His | 609 | GCCGAATTCGCGAAGCTGGAGCCATCTAC | −200 | 449 |
667 | GCCGGATCCTCAATGATGATGATGAT GATGAGCGTTGCCCGGCTCGG |
249 | ||
Hfq insertion verification | 314 | TGCCGTATACTGTCGCTCAG | PA4945 | 1390/3534 * |
315 | ATTGAACAGGGTCGATTTGC | PA4944 |
* Without and with aadA insertion cassette.