Table 2.
Extraction of data and preparation of data set
| Genotyped | Overlength (removed) | Raw | No BLAST hits (removed) | Placed | Consensus with gaps (removed) | Mismatch (included) | Overhang (removed) | Final | |
|---|---|---|---|---|---|---|---|---|---|
| A | 5959 | 14 | 5945 | 0 | 5945 | 77 | 0 | 0 | 5868 |
| B | 4734 | 24 | 4710 | 0 | 4710 | 79 | 0 | 1 | 4630 |
| C | 8205 | 72 | 8133 | 90 | 8043 | 222 | 0 | 1 | 7820 |
| D | 8508 | 103 | 8405 | 6 | 8399 | 99 | 0 | 0 | 8300 |
| E | 2053 | 2 | 2051 | 0 | 2051 | 8 | 0 | 0 | 2043 |
| F | 1009 | 4 | 1005 | 1 | 1004 | 19 | 0 | 0 | 985 |
| G | 250 | 2 | 248 | 4 | 244 | 55 | 0 | 0 | 189 |
| H | 113 | 3 | 110 | 0 | 110 | 2 | 0 | 0 | 108 |
| I | 25 | 1 | 24 | 0 | 24 | 1 | 0 | 0 | 23 |
| Total | 30,856 | 225 | 30,631 | 101 | 30,530 | 562 | 0 | 2 | 29,966 |