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. 2016 Oct 28;11(10):e0165680. doi: 10.1371/journal.pone.0165680

Table 2. Ethnic-specific MAF and in silico pathogenicity prediction of CDH23 variants in our study.

Variant Patient dbSNP In-house exome from KNIH (n = 700) KRG database (n = 622) Genotyping (n = 384) SGI (n = 1020) Score in Pph2/ SIFT/ GERP MAF in composite cohort ExAC 1000 Genomes
p.T1618K (c.C4853A) SH59-133 (Pediatric) No data 0/1400 Not detected in unknown number 0/768 0/2040 Probably Damaging/ Damaging / 5.9 0% (0/4208) N/A N/A
p.P240L (c.C719T) SH59-133 SH151-324 SB116-208 (Pediatric & Adult) rs121908354 (flagged) 1/2040 Possibly Damaging/ Damaging/ 5.19 0.05% (1/2040) 0.00009 0.0002
p.D2202N (c.G6604A) SH62-147 (Adult) rs121908349 (flagged) 0/1400 Not detected in unknown number 0/768 0/2040 Probably Damaging/ Damaging/ 5.06 0% (0/4208) 0.000008 N/A
p.A1713D (c.C5138A) SB210-412 (Adult) No data 0/2040 Probably Damaging/ Damaging/ 5.4 0% (0/2040) N/A N/A
p.P402L (c.C1205T) SB210-412 (Adult) rs373168635 (Non-flagged) 0/2040 Probably Damaging/ Tolerated/ 4.91 0% (0/2040) 0.00003 N/A
p.R1588W (c.C4762T) SH151-324 (Adult) rs137937502 4/1400 2/1244 1/768 1/2040 Probably Damaging/ Damaging/ 3.24 0.15% (8/5452) 0.0002 0.0008
p.R1916H (c.G5747A) SH62-147 (Adult) rs746971522 3/1400 2/518 0/764 0/2040 Probably Damaging/ Damaging/ 4.28 0.11% (5/4722) 0.00006 N/A