Table 1. A comparison of the proposed predictor with the existing methods based on the 10-fold cross-validation on the same 250 carbonylated proteins.
Predictor | Metrics and graph | Type of carbonylation | |||
---|---|---|---|---|---|
K | P | R | T | ||
PTMPreda | Acc (%)d | 88.59 | 82.93 | 86.64 | 88.39 |
CarSpredb | 87.22 | 82.93 | 86.22 | 86.61 | |
iCar-PseCpc | 84.43 | 86.79 | 84.23 | 86.17 | |
PTMPreda | MCCd | 0.1892 | 0.2573 | 0.1878 | 0.2186 |
CarSpredb | 0.2268 | 0.2331 | 0.2245 | 0.2040 | |
iCar-PseCpc | 0.5906 | 0.6006 | 0.6076 | 0.6185 | |
PTMPreda | Sn (%)d | 23.45 | 21.43 | 20.02 | 22.38 |
CarSpredb | 23.17 | 25.34 | 25.47 | 21.39 | |
iCar-PseCpc | 45.18 | 48.20 | 46.67 | 50.68 | |
PTMPreda | Sp (%)d | 92.99 | 93.20 | 90.99 | 91.36 |
CarSpredb | 92.43 | 93.28 | 93.39 | 93.42 | |
iCar-PseCpc | 99.25 | 98.54 | 99.57 | 98.58 | |
PTMPreda | AUCe | 0.6858 | 0.6903 | 0.5981 | 0.6563 |
CarSpredb | 0.6849 | 0.7163 | 0.7158 | 0.7134 | |
iCar-PseCpc | 0.8728 | 0.8484 | 0.8668 | 0.8603 |