Table 2.
Categorization of 7960 differentially expressed transcripts into Cuffcompare classes. Differentially expressed transcripts in developing Arabidopsis embryos belong to different classes (known, novel splice junction, exon skipping, antisense, and intergenic) and can be coding or noncoding based on CodeWise predictions.
| Transcripts (Cuffcompare class) | Coding | Noncoding |
|---|---|---|
| Known (=) | 5990 | 144 |
| Novel splice junction (j) | 1474 | 70 |
| Exon skipping (o) | 62 | 25 |
| Antisense (x and s) | 3 | 124 |
| Intergenic | 2 | 66 |
| Total | 7531 | 429 |