TABLE 3.
Characteristic | Data according to source/proteina |
|||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Xanth. sp./RoxAb | G. p. VH2/LcpVH2c | R. r. RPK1/LcpRrd | Wt/LcpK30 | R164A/LcpK30 | T168A/LcpK30 | H198A/LcpK30 | H203A/LcpK30 | H232A/LcpK30 | H259A/LcpK30 | H266A/LcpK30 | R195A/LcpK30 | R202A/LcpK30 | R328A/LcpK30 | |
Type | Wt | DUF2236 residue | DUF2236 residue | DUF2236 heme ligand | Wt like | Wt like | Wt like | Wt like | Instable mutein | Instable mutein | Wt like | |||
Color | Red | Orange | Brown | Red | Red | Red | Colorless | Red | Red | Red | Red | Colorless | Colorless | Red |
Conservation (%)e | 99.8 | 99.6 | 100 | 86.5 | 61.0 | 64.8 | 58.2 | 100 | 100 | 100 | ||||
Yield (purified) (mg/liter LB medium) | 3 | 10 | 3 | 4 | 0.5 | 1 | 2 | 0.3 | 4 | 0.1 | 0.05 | 0.3 | ||
UV/vis spectra as-isolated (nm) | ||||||||||||||
Soret band | 407 | 407 | 412 | 412 | 412 | 412 | 412 | 412 | 412 | 411 | 412 | |||
Q band (β) | 534 | 535 | 544 | 544 | 544 | 544 | 544 | 544 | 544 | 544 | ||||
645 | ||||||||||||||
Dithionite reduced | ||||||||||||||
Soret band | 417 | 428 no increase | 430 increased | 430 no increase | 430 increased | 430 no increase | 430 no increase | 430 no increase | 430 no increase | 430 no increase | ||||
Q band (β) | 521 | 531 | 532 | 532 | 532 | 532 | 532 | 532 | 532 | 532 | ||||
Q band (α) | 549/553 | 560 | 562 | 562 | 561 | 562 | 562 | 562 | 561 | 562 | ||||
Reduced + imidazole | 428 increased | No effect | No effect | 430 increased | Wt like | Wt like | Wt like | Wt like | Wt like | |||||
Activity | 532 + 561 increase | 532 + 562 increase | ||||||||||||
HPLC product assay | ODTD | Typical pattern | Typical pattern | Typical pattern Wt | Inactive | Residual activity | Inactive | Wt like | Wt like | Wt like | Wt like | Inactive | Residual activity | Wt like |
Oxygen consumption (U/mg) (22°C) | 1.3 | 0.9 | 1.5 | <0.1 | <0.1 | <0.1 | Wt like | Wt like | Wt like | Wt like | Inactive <0.1 | Inactive <0.1 | Wt like | |
CD spectra | Wt | Wt like | Wt like | Wt like | Wt like | Wt like | ||||||||
Melting point | 54.3 | 61.5 | 61.6 |
Empty space indicates that the value has not been determined. Xanth. sp., Xanthomonas sp. 35Y; G. p. VH2, Gordonia polyisoprenivorans strain VH2; R. r. RPK1, Rhodococcus rhodochrous strain RPK1.
Data from reference 5.
Data from reference 14.
Data from reference 15.
In an alignment of 495 LcpK30 homologues.