Table 4.
Fusion protein | Refinement cycle | Minimization energy (ΔG) (kcal/mol) | Ramachandran plot (%) | Z-score | RMSD (FimH-PapG) |
---|---|---|---|---|---|
FC | 10 | −11,912.82 | 94.70 | −6.97 | 1.81 Ȧ−NA |
CP | 10 | −7040.78 | 92.30 | −7.7 | NA−2.02 Ȧ |
PF | 10 | −7140.54 | 92.40 | −7.7 | 1.83 Ȧ−1.37 Ȧ |
FCP | 10 | −13,866.68 | 93.10 | −9.53 | 1.67 Ȧ−1.62 Ȧ |
CPF | 10 | −13,343.83 | 92.50 | −10.72 | 1.99 Ȧ−2.02 Ȧ |
PFC | 10 | −13,577.65 | 91.90 | −10.68 | 1.88 Ȧ−1.38 Ȧ |
Calculations for RMSD were generated with the FimH-lectin domain (PDB 1TR7) and PapG-lectin domain (PDB 1J8R). NA, not applicable.