Table 2. Details of Primers used for quantitative PCR.
Isoform specificity of primers | Primer sequence | Position | GC content (%) | Predicted Melting Temperature (°C) | Product length |
---|---|---|---|---|---|
• PPP1R12ALZ+ • (NM_002480.2) |
SENSE: 5′ TTGGAAATGGAAAAAAGGGAACG 3′ | 2936 | 39.1 | 76.8 | 120 |
ANTISENSE: 5′ CCCATTTTCATCCTTTAGCCTCT 3′ | 3057 | 43.5 | |||
• PPP1R12ALZ- • (NM_002480.2+31 NT INSERT) |
SENSE: 5’ TGTCGGCAAGAGTCAGTAT 3’ | 2957 | 50 | 85 | 104 |
ANTISENSE: 5’ TGTCGGCAAGAGTCAGTAT 3’ | 3060 | 37.5 | |||
• PPP1R12A canonical • (NM_002480.2) |
SENSE: 5’ AAGCACCACATCAACACCAA 3’ | 1704 | 45 | 60 | 192 |
SENSE: 5’ ATGGTCACTGCCGTAGGAAC 3’ | 1895 | 55 | |||
• PPP1R12BLZ+ • (NM_002481.3) |
SENSE: 5’ GAGATGGAGAAACGGGAGAG 3’ | 2797 | 55 | 78.9 | 129 |
ANTISENSE: 5’ TCTGATGAGGGCACCATTTT 3’ | 2925 | 45 | |||
• PPP1R12BLZ- • (NM_002481.3+31 NT INSERT) |
SENSE: 5’ TGTCCGGCAAGAGTCAGTAT 3’ | 2813 | 50 | 85 | 108 |
ANTISENSE: 5’ GTGTCGGATTCAGTTCTGTTAA 3’ | 2919 | 37.5 | |||
• PPP1R12B canonical • (NM_002481.3) |
SENSE: 5’ TGAGAAGCCCACAGACACTG 3’ | 2025 | 55 | 60 | 227 |
ANTISENSE: 5’ ATAGCAGGTGGGAACTGGTG 3’ | 2251 | 55 | |||
• PPP1R12CLZ+ • (NM_017607.3) |
SENSE: 5’ TGGAACTGGAGAGATTCGAGC 3’ | 2195 | 64 | 86.7 | 56.8 |
ANTISENSE: 5’ TTGTCAGCGCGGAGGTC 3’ | 2288 | 52 | |||
• PPP1R12CLZ- • (NM_017607.3+31 NT INSERT) |
SENSE: 5’ CGCAGAGGCAAGAACGCT 3’ | 2138 | 64 | 83.5 | 87 |
ANTISENSE: 5’ CGCCCAGTAGATACTGACTCTT 3’ | 2239 | 52 | |||
• PPP1R16A • (NM_032902.5) |
SENSE: 5’ TCTTCCCTCCCAGTGTTGTC 3’ | 669 | 55 | 91.5 | 200 |
ANTISENSE: 5’ GTCACAGGCATTGATGTTGG 3’ | 862 | 50 | |||
• PPP1R16B • (NM_015568.2) |
SENSE: 5’ CGGACAGGACCAACCTGTAT 3’ | 1244 | 55 | 86.4 | 198 |
ANTISENSE: 5’ CTCGTGGGATCTTGGTAGGA 3’ | 1422 | 55 | |||
• MYH1 • (NM_005963) |
SENSE: 5’AATCATAAGTGAAGAGTAATTTATCTAAC 3’ | 5896 | 24.1 | 56.4 | 95 |
ANTISENSE: 5’ CATAAGTACAAAATGGAGTGACAAAG 3’ | 5990 | 34.6 | |||
• ACTA2 • (NM_005963) |
SENSE: 5’ TGACGAAGCACAGAGCAAAA 3’ | 171 | 45 | 56.4 | 128 |
ANTISENSE: 5’ GGGCAACACGAAGCTCATT 3’ | 298 | 56.5 |