Skip to main content
. 2016 Oct 31;11(10):e0164352. doi: 10.1371/journal.pone.0164352

Table 2. Details of Primers used for quantitative PCR.

The primers were based in the human cDNA sequences. The HUGO/GeneBank accession numbers, oligonucleotide sequences, position and amplicon size are outlined below and in S1 Table.

Isoform specificity of primers Primer sequence Position GC content (%) Predicted Melting Temperature (°C) Product length
• PPP1R12ALZ+
• (NM_002480.2)
SENSE: 5′ TTGGAAATGGAAAAAAGGGAACG 3′ 2936 39.1 76.8 120
ANTISENSE: 5′ CCCATTTTCATCCTTTAGCCTCT 3′ 3057 43.5
• PPP1R12ALZ-
• (NM_002480.2+31 NT INSERT)
SENSE: 5’ TGTCGGCAAGAGTCAGTAT 3’ 2957 50 85 104
ANTISENSE: 5’ TGTCGGCAAGAGTCAGTAT 3’ 3060 37.5
• PPP1R12A canonical
• (NM_002480.2)
SENSE: 5’ AAGCACCACATCAACACCAA 3’ 1704 45 60 192
SENSE: 5’ ATGGTCACTGCCGTAGGAAC 3’ 1895 55
• PPP1R12BLZ+
• (NM_002481.3)
SENSE: 5’ GAGATGGAGAAACGGGAGAG 3’ 2797 55 78.9 129
ANTISENSE: 5’ TCTGATGAGGGCACCATTTT 3’ 2925 45
• PPP1R12BLZ-
• (NM_002481.3+31 NT INSERT)
SENSE: 5’ TGTCCGGCAAGAGTCAGTAT 3’ 2813 50 85 108
ANTISENSE: 5’ GTGTCGGATTCAGTTCTGTTAA 3’ 2919 37.5
• PPP1R12B canonical
• (NM_002481.3)
SENSE: 5’ TGAGAAGCCCACAGACACTG 3’ 2025 55 60 227
ANTISENSE: 5’ ATAGCAGGTGGGAACTGGTG 3’ 2251 55
• PPP1R12CLZ+
• (NM_017607.3)
SENSE: 5’ TGGAACTGGAGAGATTCGAGC 3’ 2195 64 86.7 56.8
ANTISENSE: 5’ TTGTCAGCGCGGAGGTC 3’ 2288 52
• PPP1R12CLZ-
• (NM_017607.3+31 NT INSERT)
SENSE: 5’ CGCAGAGGCAAGAACGCT 3’ 2138 64 83.5 87
ANTISENSE: 5’ CGCCCAGTAGATACTGACTCTT 3’ 2239 52
• PPP1R16A
• (NM_032902.5)
SENSE: 5’ TCTTCCCTCCCAGTGTTGTC 3’ 669 55 91.5 200
ANTISENSE: 5’ GTCACAGGCATTGATGTTGG 3’ 862 50
• PPP1R16B
• (NM_015568.2)
SENSE: 5’ CGGACAGGACCAACCTGTAT 3’ 1244 55 86.4 198
ANTISENSE: 5’ CTCGTGGGATCTTGGTAGGA 3’ 1422 55
• MYH1
• (NM_005963)
SENSE: 5’AATCATAAGTGAAGAGTAATTTATCTAAC 3’ 5896 24.1 56.4 95
ANTISENSE: 5’ CATAAGTACAAAATGGAGTGACAAAG 3’ 5990 34.6
• ACTA2
• (NM_005963)
SENSE: 5’ TGACGAAGCACAGAGCAAAA 3’ 171 45 56.4 128
ANTISENSE: 5’ GGGCAACACGAAGCTCATT 3’ 298 56.5