Table 1. Overview of the analyzed RNA-Seq and CLIP datasets.
| Dataset | Published (year) | Sequencing method | Platform | Accession number/website |
|---|---|---|---|---|
| EWSR1 | 2011 | PAR-CLIP | Illumina Genome Analyzer II | SRA025082 |
| FUS | 2011 | PAR-CLIP | Illumina Genome Analyzer II | SRA025082 |
| TAF15 | 2011 | PAR-CLIP | Illumina Genome Analyzer II | SRA025082 |
| HuR | 2011 | PAR-CLIP | Illumina Genome Analyzer | SRR248532 |
| MOV10 | 2012 | PAR-CLIP | Illumina Genome Analyzer II | SRR490650 |
| AGO2 | 2009 | HITS-CLIP | Illumina Genome Analyzer II | http://ago.rockefeller.edu/ |
| Human reference RNA | 2014 | RNA-Seq | Illumina HiSeq 2000 | SRR896663, SRR896664 |