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. 2016 Nov;26(11):1555–1564. doi: 10.1101/gr.209536.116

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© 2016 David et al.; Published by Cold Spring Harbor Laboratory Press

This article, published in Genome Research, is available under a Creative Commons License (Attribution 4.0 International), as described at http://creativecommons.org/licenses/by/4.0/.

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Figure 4. — Maximum likelihood trees of 71 ST1 and 122 ST47 isolates. (A) A phylogeny of ST1 isolates, constructed using 867 SNP differences remaining after recombined regions were removed. (B) A phylogeny of ST47 isolates, constructed using 186 SNP differences. Isolates are colored according to the country of isolation, and branches are similarly colored to indicate the origin of descendant nodes. A black dotted line is used where there are descendant nodes from multiple countries. The scales indicate the number of SNPs that have occurred for a given branch length.