Skip to main content
. 2016 Sep 12;17(11):1565–1577. doi: 10.15252/embr.201541691

Figure 5. Genomewide differential expression RNA‐Seq analysis between treatments.

Figure 5

  1. Principal component analysis (PCA) plot of the first two components of the analyzed samples showing separation between the three treatments: far‐red illuminated wild‐type, far‐red illuminated pXccBphP (XccBphP overexpressing), and dark wild‐type Xcc treatments.
  2. Venn diagram showing overlap of differentially expressed (DE) genes between treatments (P‐values < 0.05), bubbles are drawn to scale. A total of 1,451 DE genes were found in comparisons between all treatments and relative percentages to this number are indicated.
  3. Gene Ontology (GO) enrichment analysis. GO enrichment was evaluated at three different levels: biological processes (BP), molecular function (MF), and cellular component (CC). Relevant categories showing enrichment of DE genes are depicted. Bubble size correlates with enrichment factor values; gray bubbles represent P‐values > 0.05.