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. Author manuscript; available in PMC: 2017 Aug 25.
Published in final edited form as: Cell. 2016 Aug 25;166(5):1198–1214.e24. doi: 10.1016/j.cell.2016.07.027
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Mouse monoclonal anti-GFP (clone 7.1 and 13.1) antibody Roche Cat#11814460001; RRID: AB_390913
Mouse monoclonal anti-Hif1α (clone #241809) antibody R&D Systems Cat#MAP1536; RRID: AB_2116983
Rabbit polyclonal anti-CRY2 Bethyl Laboratories Cat#A302-615A; RRID: AB_10554665
Mouse monoclonal anti-β-Catenin BD Biosciences Cat#610154; RRID: AB_397555
Rabbit polyclonal anti-Skp1 antibody Cell Signaling Cat#2156; RRID: AB_2270271
Rabbit polyclonal anti-Skp2 antibody Cell Signaling Cat#4313; RRID: AB_2187641
Rabbit polyclonal anti-Cul1 antibody Invitrogen Cat#71-8700; RRID: AB_87955
Rabbit monoclonal anti-β-TrCP (clone D13F10) antibody Cell Signaling Cat#4394S; RRID: AB_1054763
Mouse monoclonal anti-Sec31A (clone 32/Sec31A) antibody BD Biosciences Cat#612350; RRID: AB_399716
Mouse monoclonal anti-KLHL12 (clone 2G2) antibody Thermo Fisher Cat#MA5-15649; RRID: AB_11004907
Rabbit monoclonal anti-phospho-NF-κB p65 (Ser536) (clone 93H1) antibody Cell Signaling Cat#3033L; RRID: AB_331285
Mouse monoclonal anti-IκBα (clone L35A5) antibody Cell Signaling Cat#4814S; RRID: AB_10693636
Rabbit polyclonal anti-Cul2 antibody Thermo Fisher Cat#51-1800;RRID: AB_2533898
Mouse monoclonal anti-PCNA (clone PC10) antibody Sigma-Aldrich Cat#P8825; RRID: AB_477413
Goat polyclonal anti-ARIH1 antibody Abcam Cat#ab3891; RRID:AB_304129
Mouse monoclonal anti-HIF1α αντιβοδψ BD Biosciences Cat#610958; RRID:AB_398271
Rabbit polyclonal anti-NEDD8 antibody Cell Signaling Cat#2745S; RRID:AB_10695300
Rabbit monoclonal anti-p27 (Kip1) antibody Cell Signaling Cat#3686S; RRID:AB_2077850
Mouse monoclonal anit-Cyclin E1 antibody Cell Signaling Cat#4129S; RRID:AB_2071200
Anti-Flag M2 Magnetic Beads Sigma Cat#M8823
Mouse monoclonal anti-Tubulin antibody Sigma Cat#T9026; RRID:AB_477593
Rabbit polyclonal anti-CRY1 antibody Bethyl Cat#A302-614; RRID:AB_10555376
Chemicals, Peptides, and Recombinant Proteins
MG132 Proteasome inhibitor InvivoGen Cat#tlrl-mg132; CAS: 133407-82-06
TNF (murine recombinant) Peprotech Cat#315-01A
Tetracycline Bioline Cat#BIO-87030; CAS: 64-75-5
1,10-Phenanthroline Sigma-Aldrich Cat#131377-5G; CAS: 66-71-7
HALT protease and phosphatase inhibitor cocktail Thermo Fisher Cat#78441
Fluorescein-5-Maleimide Thermo Fisher Cat#F150
Tetramethylrhodamine-5-Maleimide (single isomer) Thermo Fisher Cat#T6027
Hoechst Solution Thermo Fisher Cat#62249
Blasticidin S HCl Thermo Fisher Cat#A1113903
Zeocin Selection Reagent Thermo Fisher Cat#R25001
Hygromycin B Thermo Fisher Cat#10687010
Puromycin Dihydrochloride Thermo Fisher Cat#A1113803
Roche mini complete EDTA free Roche Cat#11836170001
Roche complete Roche Cat#4693116001
phosSTOP inhibitor Roche Cat#04-906-837-001
1,10-Phenanthroline Sigma Cat#131377
MLN4924 EMD Millipore Cat#5054770001
3x FLAG Peptide LabPe Cat#L1033
TMT10plex Label Reagent Set Thermo Fisher Cat#90406
TMT6plex Label Reagent Set Thermo Fisher Cat#90068
Trypsin Gold, MS grade Promega Cat#V5280
Lysyl Endopeptidase Wako Chemicals Cat#129-02541
Gateway LR Clonase Enzyme mix Thermo Fisher Cat#11791019
Experimental Models: Cell Lines
U2-OS ATCC ATCC#HTB-96; RRID:CVCL_0042
Flp-In T-Rex 293 Cell Line Thermo Fisher Cat#R78007; RRID:CVCL_U427
HEK293T ATCC ATTC#CRL-3216; RRID:CVCL_0063
Experimental Models: Organisms/Strains
E. coli BL21 Gold (DE3) Thermo Fisher Cat#50-125-348
E. coli Rosetta 2 (DE3) EMD Millipore Cat#71400
Sf9 Insect cells Thermo Fisher Cat#11496015
High Five Insect cells Thermo Fisher Cat#B85502
Recombinant DNA
pGEX4T1 GST-Thrombin-UBCH5B Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-UBCH7 Duda et al., 2013 N/A
pGEX4T1 GST-Thrombin-UBC12 Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-UBE2F Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-APPBP1-UBA3 Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-RBX1:His-Thrombin-CUL1CTD Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-RBX1:His-Thrombin-CUL1ΔWHB Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-RBX1ΔRING:His-Thrombin-CUL1CTD Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-RBX1(W35A):His-Thrombin-CUL1CTD Scott et al., 2014 N/A
pGEX4T1 GST-Thrombin-RBX1(D36P):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1(I37A):His-Thrombin-CUL1CTD Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-RBX1(V38P):His-Thrombin-CUL1CTD Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-RBX1(V39G):His-Thrombin-CUL1CTD Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-RBX1(D40G):His-Thrombin-CUL1CTD Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-RBX1(N41G):His-Thrombin-CUL1CTD Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-RBX1(N47A:H48A):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1(D51A):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1(I54A):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1(Q57A):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1(F81N):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1(T90A:R91A):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1(V93R):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1(N98Q):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1(E102V):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1(F103V):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1(Y106I):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1(H108K):His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX1N-RBX2RING:His-Thrombin-CUL1CTD This Study N/A
pGEX4T1 GST-Thrombin-RBX2N-RBX1RING:His-Thrombin-CUL1CTD This Study N/A
pAL His-Thrombin-CUL1NTD Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-CKS1 (5-73) Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-NEDD8 Duda et al., 2008 N/A
pGEX4T1 GST-Thrombin-NEDD8 (Q40E) This Study N/A
pGEX2TK GST-Thrombin-UB (S > C) Scott et al., 2014 N/A
pGEX2TK GST-Thrombin-UB (S > C) (I44A) This Study N/A
pGEX2TK GST-Thrombin-UB (S > C) (L71A) This Study N/A
pGEX2TK GST-Thrombin-UB (S > C) (L73A) This Study N/A
pGEX2TK GST-Thrombin-UB (S > C) (LR74A) This Study N/A
pGEX2TK GST-Thrombin-UBK0 (S > C) This Study N/A
pGEX4T1 GST-TEV-CDC34B Duda et al., 2008
pGEX4T1 GST-TEV-CUL1CR3-C:His-MPB-TEV-RBX1 (CUL1 residues 332-C) This Study N/A
pGEX4T1 GST-TEV-CUL1CTD:His-MPB-TEV-RBX1 (CUL1 residues 441-C) Jubelin et al., 2010 N/A
pGEX4T1 GST-TEV-SKP2101-C:SKP1 Duda et al., 2008 N/A
pGEX4T1 GST-TEV-FBW7ΔD:SKP1 (FBW7 residues 263-C) Jubelin et al., 2010 N/A
pGEX4T1 GST-TEV CYCLINA Duda et al., 2008 N/A
pGEX4T1 GST-TEV-CDK2:CIV1 Duda et al., 2008 N/A
pRSFDUET His-TEV-p27 (S10A:F62A:F64A) Duda et al., 2008 N/A
pRSFDUET His-TEV-p27 K > R (All LYS Mutated to ARG; DNA insert synthesized by Open Biosystems) Open Biosystems N/A
pRSFDUET His-TEV-p27 K > R (S10A:F62A:F64A: K > R All LYS mutated to ARG) This Study N/A
pRSFDUET His-TEV-p27 K > R(R25K) (S10A:F62A:F64A) This Study N/A
pRSFDUET His-TEV-p27 K > R(R47K) (S10A:F62A:F64A) This Study N/A
pRSFDUET His-TEV-p27 K > R(R59K) (S10A:F62A:F64A) This Study N/A
pRSFDUET His-TEV-p27 K > R(R68K) (S10A:F62A:F64A) This Study N/A
pRSFDUET His-TEV-p27 K > R(R75K) (S10A:F62A:F64A) This Study N/A
pRSFDUET His-TEV-p27 K > R(R81K) (S10A:F62A:F64A) This Study N/A
pRSFDUET His-TEV-p27 K > R(R96K) (S10A:F62A:F64A) This Study N/A
pRSFDUET His-TEV-p27 K > R(R100K) (S10A:F62A:F64A) This Study N/A
pRSFDUET His-TEV-p27 K > R(R134K) (S10A:F62A:F64A) This Study N/A
pRSFDUET His-TEV-p27 K > R(R153K) (S10A:F62A:F64A) This Study N/A
pRSFDUET His-TEV-p27 K > R(R165K) (S10A:F62A:F64A) This Study N/A
pRSFDUET His-TEV-p27 K > R(R189K) (S10A:F62A:F64A) This Study N/A
pRSFDUET His-TEV-p27 K > R(R190K) (S10A:F62A:F64A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 Duda et al., 2013 N/A
pGEX4T1 GST-TEV-ARIH190-C (ARIH1 residues 90-C) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (R118A:E119A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (V123D) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Q125) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (I130A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (H137A:N139A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (E143A:K144A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (E147A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Y149A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (F150A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N153A:L154A:E155A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K156A:L157A:F158A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (E160A:C161A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (H162A:V163A:I164A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N165A:P166A:S166A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K168A:K169A:S170A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (R171A:T172A:R173A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Q174A:M175A:N176A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (T177A:R178A:S179A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (I188A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (D241A:D242A:N243A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (T244A:V245A:M246A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (R247A:L248A:I249A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (T250A:D251A:S252A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K253A:V254A:K255A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K257A:Y258A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Q259A:H260A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (L261A:I262A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (T263A:N264A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (S265A:F266A:V267A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (E268A:C269A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N270A:R271A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (L272A:L273A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K274A:W275A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (P279A:D280A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (H282A:H283A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Q288A:Y289A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (D291A:K293A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (R296A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K298A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Q302A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (D313A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (W319A:L320A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K321A:K322A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (W323A:I324A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K325A:K326A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (C327A:D328A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (D329A:D330A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (S331A:E332A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (T333A:S334A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N335A:W336A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N340A:T341A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K342A:E343A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (P345A:K346A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (H348A:V349A:T350A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (I351A:E352A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N358A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (H359A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (M360A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (V361D) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (R363A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N364A:Q365A:N366A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K368A:E370A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (W373A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (V374A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (P378A:W379A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (E380A:P381A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (G383D:S384D:A385D) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (W386A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N388A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N390A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (R391A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Y392A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (D395A:D396A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (A397D:K398I:A399V) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (A400N:R401Q:D402S) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (A403Q:E405A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Q412A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (L415A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Y417A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N419A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (R420A:N423A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (H424A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (R429A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (F430A:E431A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (H432A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Y435A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (M455A:Q456A:Q457A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (W452A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K483A:K484A:N485A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Y476A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N486A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (I489A:I490A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (E492A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N493A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Q495A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (D497A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (E499A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N500A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K522A:Q523A:K524A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Q526A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (R530A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Y531A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (R535A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (R537A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (H452A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Y547A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (F430A:E431A:N503A) Open Mutant A This Study N/A
pGEX4T1 GST-TEV-ARIH1 (R420A:N423A:N503A) Open Mutant B This Study N/A
pGEX4T1 GST-TEV-ARIH1 (V123D:R420A:N423A:N503A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K156A:L157A:F158A:R420A:N423A:N503A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (I188A:R420A:N423A:N503A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (K257A:Y258A:R420A:N423A:N503A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (S265A:F266A:V267A:R420A:N423A:N503A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (N340A:T341A:R420A:N423A:N503A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (IT350A:I351A:R420A:N423A:N503A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (P378A:W379A:R420A:N423A:N503A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (W386A:R420A:N423A:N503A) This Study N/A
pGEX4T1 GST-TEV-ARIH1 (Y531A:W379A:R420A:N423A:N503A) This Study N/A
pMal MBP-TEV-KLHL12-His Jin et al., 2012 N/A
pFastbac1 CUL1 This Study N/A
pFastbacHTB His-TEV-CUL3 This Study N/A
pFastbac1 SKP1 This Study N/A
pFastbac GST-TEV-FBXL3 This Study N/A
pFastbac GST-TEV-RBX1 This Study N/A
pFastbac1 CRY1ΔC (CRY1 residues 1-532) This Study N/A
pFastbac GST-TEV-FBXW11 This Study N/A
pFastbac SEC13 Jin et al., 2012 N/A
pFastbac His-TEV-SEC31A Jin et al., 2012 N/A
pcDNA5 KLHL12-FLAG Jin et al., 2012 N/A
pCS2 His-UB Jin et al., 2012 N/A
pcDNA FRT/TO Thermo Fisher V652020
pDONR223 ARIH1 Orfeome V8.1 HsCD00378777
pOG44 Thermo Fisher V600520
pHAGE-Puro-C-Flag-HA Huttlin et al., 2015 N/A
pcDNA5-FRT/TO Invitrogen Cat#V6520-20
pcDNA5-FRT/TO+GFP Kelsall et al., 2013 N/A
pcDNA5-FRT/TO+GFP-ARIH1 Kelsall et al., 2013 N/A
pcDNA5-FRT/TO+GFP-ARIH1 (C357S) Kelsall et al., 2013 N/A
pcDNA5-FRT/TO+GFP-ARIH1 (siRNA resistant) This study N/A
Plasmid: pcDNA5-FRT/TO+GFP-ARIH1 (F430A, E431A, E503A) Kelsall et al., 2013 N/A
Plasmid: pcDNA5-FRT/TO+GFP-ARIH1 (C357S, F430A, E431A, E503A) Kelsall et al., 2013 N/A
Sequence-Based Reagents
siGENOME Non-targeting siRNA #1 Dharmacon Cat#D-001210-01-05
Set of 4 upgrade: siGENOME ARIH1 siRNA; siRNA #1: GUGCUGGAGUGAAUAUUUA; siRNA #2: CGAGAUAUUUCCCAAGAUU; siRNA #3: ACACUUAUGUCUUCGCUUU; siRNA #4: GGAUAUGCCUUGUCAGAUC Dharmacon Cat#MU-019984-00-0002
Silencer Select Pre-Designed siRNA ARIH1: siRNA ID: s223658; siRNA #5: ACACGAAAUAGUGUGACCCat Thermo Fisher Cat#4392420
Silencer Select Pre-Designed siRNA ARIH1: siRNA ID: s223660; siRNA #6: UUCCAUCAAAGUACCUUUCca Thermo Fisher Cat#4392420
FlexiTube GeneSolution GS25820 for ARIH1; siRNA #7: CTGCTACTTGAACTACCCTAA; siRNA #8: CTGCGCTTTGAGCACAAACTA; siRNA #9: GCGCCTGATCACAGATTCAAA; siRNA #10: TAGAGTGCAATCGACTGTTAA QIAGEN Cat#GS25820
Software and Algorithms
Prism GraphPad ver 5; RRID: SCR_002798
R statistical package http://www.rproject.org/ ver 3.2.3; RRID: SCR_001905
Bioconductor https://www.bioconductor.org ver 3.3; RRID: SCR_006442
Other
DMEM, high glucose, pyruvate Thermo Fisher Cat#11995-073
Lipofectamine 3000 Life Technologies Cat#L3000008
Lipofectamine RNAi Max Life Technologies Cat#13778075
FxCycle PI/Rnase Staining Solution Life Technologies Cat#F10797
C-18 Empore extraction Disks Thermo Fisher Cat#14-386-2