Table 2.

Spectrum of Small Indels^a in the Comparison Between A_T and D_T Homoeologous BACs of Gossypium hirsutum

	AT Genome		DT Genome
	No. of indels	bp	No. of indels	bp
1-10 bp	210	593	207	489
11-20 bp	25	369	34	506
21-30 bp	10	260	17	414
31-40 bp	8	274	5	239
41-50 bp	1	49	8	346
51-100 bp	5	353	5	351
101-200 bp	4	665	2	321
200-400 bp	1	214	1	231
Small indels	264	2777	279	2897
All indels	269	19,977	286	16,009

^aIndels are binned in multiples of 10 bp because of up to an indel length of 50 bp; the last three bins span 50 bp, 100 bp, and 200 bp, respectively, because of the infrequency of these larger indels in either genome. The last two rows tally totals for the number and amount of sequence accounted for by small indels (<400 bp) and all indels, respectively.