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. 2016 Nov 3;7:1755. doi: 10.3389/fmicb.2016.01755

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Copyright © 2016 Wang, Li, Lin, Pang, Liu, Liu, Wang, Zhang, Wu, Lin and Chen.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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The relative transcription levels of genes involved in sulfur metabolism and signaling systems during the S⁰-cultivating process. This is the valid mean value of three independent replicates showing fold changes (FC) determined by RT-qPCR analyses of the mutant against the wild-type. FC ≥ 2, P ≤ 0.05 and FC ≤ 0.5, P ≤ 0.05 were regarded as the significant changes. FC ≥ 2, P ≤ 0.05, up-regulation; FC ≤ 0.5, P ≤ 0.05, down-regulation; 0.5 ≤ FC ≤ 2, P ≥ 0.05, no change (data are not shown in the figure). FC-values are represented with different colors as indicated in the color bar. The data of standard deviation (SD) and P-value were shown in Supplementary Text S1. The SD-value was calculated by using the Origin software with “descriptive statistics.” The P-value was calculated by using the GraphPad Prism software with “unpaired t-test.” The original data with the values for standard deviation and P-value are listed in Supplementary Text S1. The putative function of proteins encoded by these genes: soxX-I (A5904_2486), soxX-II (A5904_2525), cytochrome c class I; soxY-I (A5904_2487), soxY-II (A5904_2520), sulfur covalently binding protein; soxZ-I (A5904_2488), soxZ-II (A5904_2521), sulfur compound chelating protein; soxA-I (A5904_2489), soxA-II (A5904_2526), cytochrome c (diheme); soxB-I (A5904_2491), soxB-II (A5904_2522), sulfate thiol esterase; hdrC (A5904_1042), hdrB (A5904_1043), heterodisulfide reductase subunit C and B; dsrE (A5904_2473), tusA (A5904_2474), sulfur transferase; rhd-1 (A5904_0894), rhd-2 (A5904_1407), rhd-3 (A5904_2860), rhd-4 (A5904_2475), rhodanese (sulfur transferase); sqr-1 (A5904_1436), sqr-2 (A5904_2678), sulfide quinone reductase; sdo-1 (A5904_0421), sdo-2 (A5904_0790), sulfur dioxygenase; envZ (A5904_2589), ompR (A5904_2590), osmolarity regulation; phoB (A5904_0374), phoR (A5904_0373), phosphate regulon; cheY (A5904_1450), cheA (A5904_1448), chemotaxis; tspR (A5904_2485), tspS (A5904_2484), regulation for Sox pathway; kdpD (A5904_1340), unknown; fleS (A5904_1479), flagellum associated; rr (A5904_0219, A5904_0936, A5904_1207, A5904_1342, A5904_1480), putative response regulators in TCSs; hk (A5904_0218, A5904_0934), putative sensor histidine kinases in TCSs; sr (A5904_0420, A5904_0789, A5904_1113, A5904_2677), putative regulators in SCSs.