Table 2.

Identification of potential RDs for lineage classification in Mtb lineages with existing RD markers

Lineage	Sample size	Existing RD markers			RD detected
		Name	Start	End	No.	Start	End	Length (bp)
Lineage 4.8	15	RD219	3,448,504	3,451,396	1	3,448,497	3,451,398	2,902
Lineage 4.1.2.1	12	RD182	2,545,194	2,551,674	1	2,545,195	2,551,675	6,481
					2	2,361,910	2,363,682	1,773
					3	3,194,709	3,194,793	85
					4	4,375,626	4,375,708	83
Lineage 4.3.3	9	RD115	453,364	455,971	1	453,367	455,972	2,606
					2	171,458	171,778	321
					3	2,306,444	2,306,724	281
Lineage 4.1.1.3	9	RD193	2,704,306	2,704,807	1	2,704,310	2,704,806	497
					2	2,339,260	2,339,402	143
Lineage 4.1.1.1	7	RD183	2,585,853	2,588,770	1	2,585,856	2,588,768	2,913
					2	4,370,424	4,373,233	2,810
					3	2,866,744	2,866,852	109
Lineage 4.5	6	RD122	669,793	670,964	1	669,795	670,965	1,171

Note Bold letters emphasize the concordance between exiting RD markers and RDs detected. The start and end positions correspond to the genomic positions of Mtb H37Rv genome