Table 9.
Presumptive human chromosome 17 loci that were mapped in Ambystoma
| Marker ID | Primersa | Diagnosisb | LGc | Symbold | RefSeq IDe | E-valuef |
| Pl_6_E/F_6 | F-GAAAACCTGCTCAGCATTAGTGT | ASA | ul | PFN1 | NP_005013 | E-34 |
| R-TCTATTACCATAGCATTAATTGGCAG | ||||||
| Pl_5_G/H_5 | F-CTATTTCATCTGAGTACCGTTGAATG | PE (A) | 23 | CGI-125 | NP_057144 | E-56 |
| R-TAATGTAGAACTAAATGGCATCCTTC | ||||||
| E-CCATGGTGCAGGAAGAGAGCCTATAT | ||||||
| Pl_0.4_A/B_1 | F-GTCTCATTATCCGCAAACCTGT | SP | 1 | RPL19 | NP_000972 | E-67 |
| R-ATTCTCATCCTCCTCATCCACGAC | ||||||
| Pl_4_B_7/8 | F-CCTAGAACATTACCAAAACAGACTCA | RD (Dpn II) | 1 | KRT10 | NP_061889 | E-17 |
| R-AATGAAGAAGTATTGCATGTGAGAAC | ||||||
| Pl_4_B_9/10 | F-GAACTTGTTGGCAGGTTTCTCTT | RD (AciI) | 1 | KRT17 | NP_000413 | E-146 |
| R-CTAGTGATAGGTTGGACATACCAGAG | ||||||
| Pl_10_C/D_4 | F-CTCCACTATTTAAAGGACATGCTACA | PE (A) | 1 | SUI1 | NP_005792 | E-48 |
| R-TTAATATAGCACAACATTGCCTCATT | ||||||
| E-TGCTACATTAATGTAATAAACGGCATCATC | ||||||
| Pl_6_E/F_11 | F-AAGAGAAGTTCCTAGATGAGTTGGAG | PE (A) | 1 | HSPC009 | NP_054738 | E-26 |
| R-TGAAGAGAGAACTCAAAGTGTCTGAT | ||||||
| E-TCATGTTTTGCTCTGCTGTGCAGT | ||||||
| Pl_9_A/B_10 | F-TGATAGTTTCTGGATTAAGACGAGTG | PE (T) | 1 | FLJ13855 | NP_075567 | E-15 |
| R-CTTAGAGCCATTGTTACAAGATGTTC | ||||||
| E-GTGATCTAGTGGGATCAAACCCTAAAGACC | ||||||
| Pl_10_C/D_9 | F-AAAGTGCCAAGAAGGAGATTAACTT | PE (T) | 9 | NME1 | NP_000260 | E-71 |
| R-GAGCTCAGAAAACAAGGCAGTAAC | ||||||
| E-AAATGGATCTACGAGTAGACCTTGACCC | ||||||
| Pl_9_C/D_9 | F-GAGTCTCCTTTAGGATTGACGTATCT | PE (T) | 23 | FLJ20345 | NP_060247 | E-17 |
| R-GCTATGTGAGCAGAGATAAAAGTCAG | ||||||
| E-GTTACAGCATCAGTGGGATGTGGTATGT | ||||||
| Pl_8_C/D_9 | F-AGGATACCAACCTCTGTGCTATACAT | PE (C) | 15 | H3F3B | NP_005315 | E-66 |
| R-TAAATGTATTTACAAACCGAAAGCAA | ||||||
| E-CGTGGCGAGCGTGCCTAGT | ||||||
| Pl_9_C/D_4 | F-GTGGTTATTTGTAACATTTCGTTGAC | PE (A) | 8 | SFRS2 | NP_003007 | E-40 |
| R-AATTACATTTGGGCTTCTCAATTTAC | ||||||
| E-TTTTTAAACGCGTAAAAATGTTAACAGA | ||||||
| Pl_6_C/D_5 | F-CCGTAAATGTTTCTAAATGACAGTTG | PE (G) | 2 | ACTG1 | NP_001605 | 0 |
| R-GGAAAGAAAGTACAATCAAGTCCTTC | ||||||
| E-GATTGAAAACTGGAACCGAAAGAAGATAAA |
aSequences are 5' amplification primers, 3' amplification primers, or primer extension probes, and are preceded by F-, R-, and E- respectively. bGenotyping methods are abbreviated: allele specific amplification (ASA), size polymorphism (SP), restriction digestion (RD), primer extension (PE). Diagnostic restriction enzymes and diagnostic extension bases are provided in parentheses. cAmbystoma linkage group ID. "ul" designates markers that are unlinked. dOfficial gene symbols as defined by the Human Genome Organization Gene Nomenclature Committee http://www.gene.ucl.ac.uk/nomenclature/. eBest BLASTX hit (highest e-value) from the human RefSeq database using the contig from which each marker was designed as a query sequence. fHighest E-value statistic obtained by searching contigs, from which EST markers were designed, against the human RefSeq database.