Extended Data Table 3.
SNPs showing the strongest phenotypic associations in the H. melpomene/timareta/silvaniform comparison.
*downstream of cortex, †between exons 3 and 4 of cortex, ‡upstream of cortex, §between exons U4 and U3 of cortex. None of these SNPs are within known TEs. Colours show phenotypic associations: yellow = yellow hindwing bar; pink = no yellow hindwing bar; green = yellow forewing band; blue = no yellow forewing band; grey = allele does not match expected pattern.
| Species | Race | Sample code | HW bar | SNP pos 457083† (p=6.07E-10) | SNP pos 439063* (p=1.72E-09 ) | SNP pos 602131‡ (p=2.42E-09) | SNP pos 457056† (p=2.42E-09) | FW band | SNP pos 584465§ (p=1.37E-07) | SNP pos 584418§ (p=1.41E-07) | SNP pos 584633§ (p=2.10E-07) | SNP pos 603344‡ (p=2.19E-07) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| H. melpomene | aglaope | 09-246 | 0 | A/A | A/G | A/A | C/C | 1 | T/T | A/A | NA | T/T |
| H. melpomene | aglaope | 09-267 | 0 | A/A | G/G | A/A | C/C | 1 | T/T | A/A | C/C | T/T |
| H. melpomene | aglaope | 09-268 | 0 | A/A | G/G | A/A | C/C | 1 | T/T | A/A | C/C | T/T |
| H. melpomene | aglaope | 09-357 | 0 | A/A | G/G | G/A | C/C | 1 | T/T | NA | C/C | T/T |
| H. melpomene | aglaope | aglaope.1 | 0 | A/A | G/G | N/A | C/C | 1 | C/T | T/A | T/C | T/T |
| H. melpomene | amandus | 2221 | 1 | A/A | NA | G/G | C/C | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | amandus | 2228 | 1 | A/A | NA | G/G | C/C | 0 | C/T | T/A | T/C | A/A |
| H. melpomene | amaryllis | 09-332 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | amaryllis | 09-333 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | amaryllis | 09-075 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | amaryllis | 09-079 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | amaryllis | amaryllis.1 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | bellula | 228 | 1 | T/T | NA | G/G | T/T | 0 | C/C | T/T | T/T | NA |
| H. melpomene | bellula | 231 | 1 | T/T | NA | G/A | T/T | 0 | C/T | T/A | T/C | NA |
| H. melpomene | cythera | 2856 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | cythera | 2857 | 1 | NA | NA | NA | NA | 0 | NA | NA | NA | NA |
| H. melpomene | maIleti | 17162 | 0 | A/A | G/G | A/A | C/C | 1 | T/T | A/A | C/C | T/T |
| H. melpomene | melpomene | 18038 | 0 | A/A | G/G | G/G | C/C | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | melpomene | 18097 | 0 | NA | G/G | NA | C/C | 0 | C/C | T/T | T/T | NA |
| H. melpomene | melpomene | m0.06 | 0 | A/A | G/G | G/G | C/C | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | melpomene | gen_ref | 0 | A/A | G/G | NA | C/C | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | melpomene | 13435 | 0 | A/A | G/G | A/A | C/C | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | melpomene | 9315 | 0 | A/A | G/G | A/A | C/C | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | melpomene | 9316 | 0 | A/A | G/G | A/A | C/C | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | melpomene | 9317 | 0 | A/A | G/G | A/A | C/C | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | plesseni | 9156 | 0 | A/A | G/G | A/A | C/C | 0 | C/C | T/T | T/T | NA |
| H. melpomene | plesseni | 16293 | 0 | A/A | G/G | A/A | C/C | 0 | C/C | T/T | T/T | NA |
| H. melpomene | rosina | rosina.1 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | rosina | 2071 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | rosina | 531 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | rosina | 533 | 1 | T/T | NA | G/G | T/T | 0 | C/C | T/T | T/T | NA |
| H. melpomene | rosina | 546 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. melpomene | thelixopeia | 13566 | 0 | A/A | G/G | A/A | C/C | 1 | C/T | T/A | T/C | T/T |
| H. melpomene | vulcanus | 14632 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | NA |
| H. melpomene | vulcanus | 519 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. timareta | florencia | 2403 | 0 | A/A | G/G | A/A | C/C | 1 | T/T | A/A | C/C | T/T |
| H. timareta | florencia | 2406 | 0 | A/A | A/G | A/A | C/C | 1 | T/T | A/A | C/C | T/T |
| H. timareta | florencia | 2407 | 0 | A/A | A/G | A/A | C/C | 1 | T/T | A/A | C/C | T/T |
| H. timareta | florencia | 2410 | 0 | A/A | G/G | A/A | C/C | 1 | T/T | A/A | C/C | T/T |
| H. timareta | timareta | 8533 | 0 | A/A | G/G | A/A | C/C | 1 | C/T | T A | T/C | T/T |
| H. timareta | timareta | 9184 | 0 | A/A | G/G | A/A | C/C | 1 | T/T | A/A | C/C | T/T |
| H. timareta | timareta | 8520 | 0 | A/A | G/G | A/A | C/C | 1 | T/T | A/A | C/C | T/T |
| H. timareta | timareta | 8523 | 0 | A/A | G/G | A/A | C/C | 1 | T/T | A/A | C/C | T/T |
| H. timareta | thelxinoe | 09-312 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. timareta | thelxinoe | 8624 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. timareta | thelxinoe | 8628 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. timareta | thelxinoe | 8631 | 1 | T/T | A/A | G/G | T/T | 0 | C/C | T/T | T/T | A/A |
| H. elevatus | 09-343 | 0 | A/T | G/G | A/A | T/T | 1 | C/T | NA | C/C | T/T | |
| H. pardalinus | sergestus | 09-326 | 0 | A/A | A/A | A/A | NA | 0 | C/C | T/T | T/T | NA |